Detailed information NTG0181260

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: A3K93_RS11430
• Genome accession: NZ_CP015594
• Coordinates: 2368734..2369594 (+)
• Length: 286 a.a.
• NCBI ID: WP_067731324.1
• Uniprot ID: A0A172YR60
• Organism: Acinetobacter sp. NCu2D-2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2363734..2374594

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A3K93_RS11410 (A3K93_11410)	secG	2364343..2364672 (-)	330	WP_067731320.1	preprotein translocase subunit SecG	-
A3K93_RS11415 (A3K93_11415)	tpiA	2364686..2365477 (-)	792	WP_067731321.1	triose-phosphate isomerase	-
A3K93_RS11420 (A3K93_11420)	pilB	2365762..2367471 (+)	1710	WP_067731322.1	type IV-A pilus assembly ATPase PilB	Machinery gene
A3K93_RS11425 (A3K93_11425)	pilC	2367505..2368734 (+)	1230	WP_067731323.1	type II secretion system F family protein	Machinery gene
A3K93_RS11430 (A3K93_11430)	pilD	2368734..2369594 (+)	861	WP_067731324.1	A24 family peptidase	Machinery gene
A3K93_RS11435 (A3K93_11435)	coaE	2369596..2370192 (+)	597	WP_067731325.1	dephospho-CoA kinase	-
A3K93_RS11440 (A3K93_11440)	-	2370211..2371131 (-)	921	WP_081408536.1	DMT family transporter	-
A3K93_RS11445 (A3K93_11445)	rlmB	2371165..2371914 (-)	750	WP_067731326.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
A3K93_RS11450 (A3K93_11450)	-	2372055..2372378 (-)	324	WP_067731327.1	pyrimidine/purine nucleoside phosphorylase	-
A3K93_RS11455 (A3K93_11455)	recN	2372792..2374453 (+)	1662	WP_067731328.1	DNA repair protein RecN	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32223.60 Da
• Isoelectric Point: 7.7862

>NTDB_id=181260 A3K93_RS11430 WP_067731324.1 2368734..2369594(+) (pilD) [Acinetobacter sp. NCu2D-2]
MHDLIQYCVQNPIALYSVIGLFSLCIGSFLNVVIYRTPKMMEQEWRTDCQLFLHPEQPIIDESKITLSKPASTCPQCHNP
IRWYQNIPVISWLILRGKCGNCQNPISIRYPFIELLTAVCALVVVSVFGPTIHMLFGLVLTYVLITLTFIDFDTQLLPDR
YTLPLAALGLAINSYSLYTTPTMAIWGYIIGFLCLWVVYYLFKIVTGKEGMGYGDFKLLAALGAWMGPLLLPLIVLLSSL
VGAIIGIILLKIRKENQPFAFGPYIAIAGWIAFLWGEKIMQIYLGQ

Nucleotide

• Length: 861 bp

>NTDB_id=181260 A3K93_RS11430 WP_067731324.1 2368734..2369594(+) (pilD) [Acinetobacter sp. NCu2D-2]
ATGCACGATTTAATTCAGTACTGTGTTCAAAACCCAATTGCGCTGTATAGCGTAATTGGGCTTTTTAGCTTATGCATCGG
TAGTTTTCTCAATGTTGTGATCTACCGTACCCCAAAAATGATGGAACAAGAGTGGCGGACAGACTGCCAACTCTTTTTAC
ATCCTGAACAACCGATTATTGATGAGTCAAAAATCACGCTCAGCAAACCAGCATCCACCTGCCCTCAATGTCACAACCCA
ATTCGCTGGTATCAAAATATTCCTGTGATCAGTTGGCTGATATTAAGAGGAAAATGTGGCAACTGCCAAAATCCGATCAG
CATTCGCTATCCATTTATTGAGTTATTGACTGCGGTATGTGCATTGGTCGTTGTTTCAGTTTTTGGACCCACAATCCATA
TGCTATTTGGCTTGGTATTAACTTATGTACTGATCACTTTAACCTTTATCGACTTTGACACCCAGTTACTTCCCGATCGT
TATACTCTCCCCTTAGCTGCATTAGGTCTCGCGATCAATAGCTATAGCCTTTACACCACACCGACTATGGCCATTTGGGG
TTATATCATTGGTTTCTTATGCCTATGGGTTGTGTACTACTTGTTTAAGATTGTGACTGGTAAAGAAGGCATGGGCTATG
GTGACTTTAAACTCCTTGCAGCATTGGGCGCTTGGATGGGTCCACTTTTACTGCCTTTGATCGTTTTACTATCCTCTCTC
GTGGGTGCAATCATCGGAATTATTCTGCTAAAAATCCGTAAAGAAAATCAGCCCTTTGCTTTCGGTCCTTATATCGCAAT
CGCAGGCTGGATTGCCTTCCTGTGGGGCGAAAAAATCATGCAAATCTATTTAGGACAATAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

3D structure

• AlphaFold DB: A0A172YR60

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	78.947	99.65	0.787
pilD	Acinetobacter baumannii D1279779	78.596	99.65	0.783
pilD	Vibrio cholerae strain A1552	55.597	93.706	0.521
pilD	Vibrio campbellii strain DS40M4	52.809	93.357	0.493
pilD	Neisseria gonorrhoeae MS11	46.667	99.65	0.465