Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   A1D33_RS11445 Genome accession   NZ_CP015443
Coordinates   2461020..2461361 (+) Length   113 a.a.
NCBI ID   WP_012118637.1    Uniprot ID   -
Organism   Bacillus velezensis strain CC09     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2456020..2466361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1D33_RS11410 (A1D33_011410) - 2456142..2456939 (+) 798 WP_007614310.1 flagellar hook-basal body protein -
  A1D33_RS11415 (A1D33_011415) - 2456964..2457785 (+) 822 WP_042635742.1 flagellar hook-basal body protein -
  A1D33_RS11420 (A1D33_011420) - 2457803..2458867 (-) 1065 WP_042635552.1 tetratricopeptide repeat protein -
  A1D33_RS11425 (A1D33_011425) fabZ 2459063..2459488 (+) 426 WP_003151242.1 3-hydroxyacyl-ACP dehydratase FabZ -
  A1D33_RS11430 (A1D33_011430) mscL 2459545..2459940 (+) 396 WP_003151243.1 large conductance mechanosensitive channel protein MscL -
  A1D33_RS11435 (A1D33_011435) - 2459986..2460396 (-) 411 WP_007407558.1 YwpF-like family protein -
  A1D33_RS11440 (A1D33_011440) - 2460569..2460922 (+) 354 WP_003151247.1 hypothetical protein -
  A1D33_RS11445 (A1D33_011445) ssbB 2461020..2461361 (+) 342 WP_012118637.1 single-stranded DNA-binding protein Machinery gene
  A1D33_RS11450 (A1D33_011450) - 2461570..2462352 (+) 783 WP_039253550.1 DeoR/GlpR family DNA-binding transcription regulator -
  A1D33_RS11455 (A1D33_011455) - 2462349..2463206 (+) 858 WP_039063770.1 Cof-type HAD-IIB family hydrolase -
  A1D33_RS11460 (A1D33_011460) - 2463319..2466093 (-) 2775 WP_033574409.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12617.47 Da        Isoelectric Point: 9.0994

>NTDB_id=179855 A1D33_RS11445 WP_012118637.1 2461020..2461361(+) (ssbB) [Bacillus velezensis strain CC09]
MFNHVMLVGRLTKDPELRFTAAGIPVAHITLAVNRNFKSASGETGTDFVNCTIWRKNAENTALYCQKGSMVGVSGRIQTR
SYEKTDGVKVYVTEVMADTVRFMDQKQKEPLAE

Nucleotide


Download         Length: 342 bp        

>NTDB_id=179855 A1D33_RS11445 WP_012118637.1 2461020..2461361(+) (ssbB) [Bacillus velezensis strain CC09]
TTGTTTAACCACGTTATGCTTGTCGGCCGGCTGACGAAAGACCCGGAGCTCCGTTTTACAGCAGCGGGCATTCCCGTCGC
ACATATTACGTTGGCGGTAAATCGCAATTTTAAAAGCGCGTCGGGTGAAACCGGAACCGACTTCGTCAACTGCACCATCT
GGAGAAAAAACGCTGAAAACACGGCATTGTACTGCCAAAAAGGGTCAATGGTCGGTGTAAGCGGCAGAATCCAGACAAGA
AGCTATGAAAAGACAGACGGCGTAAAAGTTTATGTGACCGAGGTCATGGCTGATACCGTTCGGTTTATGGATCAAAAACA
GAAAGAGCCGCTGGCTGAATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

76.106

100

0.761
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

93.805

0.54
  ssb Latilactobacillus sakei subsp. sakei 23K

51.887

93.805

0.487
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.903

100

0.469
  ssbA Streptococcus mutans UA159

42.478

100

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

41.593

100

0.416
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.593

100

0.416
  ssbB/cilA Streptococcus pneumoniae Rx1

40.708

100

0.407
  ssbB/cilA Streptococcus pneumoniae D39

40.708

100

0.407
  ssbB/cilA Streptococcus pneumoniae R6

40.708

100

0.407
  ssbB/cilA Streptococcus mitis SK321

40.708

100

0.407
  ssbB Lactococcus lactis subsp. cremoris KW2

37.5

99.115

0.372

Multiple sequence alignment