Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BTI679_RS11065 Genome accession   NZ_CP015257
Coordinates   2125996..2126334 (+) Length   112 a.a.
NCBI ID   WP_064473950.1    Uniprot ID   A0A1A9Q098
Organism   Bacillus wiedmannii strain Bt18679     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2120996..2131334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTI679_RS11040 (BTI679_22300) - 2121208..2121972 (-) 765 WP_088046775.1 hypothetical protein -
  BTI679_RS11045 (BTI679_22310) - 2122082..2122729 (+) 648 WP_000165957.1 HD domain-containing protein -
  BTI679_RS11050 (BTI679_22320) - 2122726..2124621 (+) 1896 WP_103655000.1 ABC-F family ATP-binding cassette domain-containing protein -
  BTI679_RS11055 (BTI679_22330) - 2124697..2125428 (+) 732 WP_001260655.1 Bax inhibitor-1/YccA family protein -
  BTI679_RS11060 (BTI679_22340) - 2125583..2125837 (+) 255 WP_000975142.1 DUF4318 domain-containing protein -
  BTI679_RS11065 (BTI679_22350) ssbA 2125996..2126334 (+) 339 WP_064473950.1 single-stranded DNA-binding protein Machinery gene
  BTI679_RS11070 (BTI679_22360) - 2126499..2127626 (+) 1128 WP_064473949.1 conserved virulence factor C family protein -
  BTI679_RS11075 (BTI679_22370) - 2127630..2128013 (+) 384 WP_103655001.1 DCC1-like thiol-disulfide oxidoreductase family protein -
  BTI679_RS11080 (BTI679_22380) - 2128097..2128531 (+) 435 WP_000063705.1 BrxA/BrxB family bacilliredoxin -
  BTI679_RS11085 (BTI679_22390) - 2128581..2129357 (+) 777 WP_103655002.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 12895.71 Da        Isoelectric Point: 9.0926

>NTDB_id=178121 BTI679_RS11065 WP_064473950.1 2125996..2126334(+) (ssbA) [Bacillus wiedmannii strain Bt18679]
MMNRVVLIGRLTKEPELYYTKQGVAYARICVAVNRGFRNSLGEQQVDFINCVVWRRSAENVTEYCTKASLVGITGRIHTS
NYEDDQGKRIYKTEVVIESITFLERRREGASQ

Nucleotide


Download         Length: 339 bp        

>NTDB_id=178121 BTI679_RS11065 WP_064473950.1 2125996..2126334(+) (ssbA) [Bacillus wiedmannii strain Bt18679]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAGCAAGGGGTCGCTTATGC
ACGAATATGTGTTGCGGTGAATAGAGGTTTTCGAAATAGTTTAGGTGAGCAACAAGTAGATTTTATTAATTGTGTCGTTT
GGCGCAGATCGGCTGAGAATGTAACTGAATATTGTACGAAGGCGTCTCTTGTTGGAATTACCGGACGTATTCATACGAGT
AATTACGAGGATGATCAAGGTAAGAGAATATATAAAACGGAAGTTGTAATTGAGAGCATTACATTTTTGGAGAGAAGGCG
GGAGGGCGCATCGCAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1A9Q098

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

94.643

0.545
  ssb Latilactobacillus sakei subsp. sakei 23K

50.42

100

0.536
  ssbB Bacillus subtilis subsp. subtilis str. 168

47.788

100

0.482
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.636

98.214

0.429
  ssbA Streptococcus mutans UA159

41.818

98.214

0.411
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.818

98.214

0.411
  ssbB/cilA Streptococcus pneumoniae Rx1

40.909

98.214

0.402
  ssbB/cilA Streptococcus pneumoniae D39

40.909

98.214

0.402
  ssbB/cilA Streptococcus pneumoniae R6

40.909

98.214

0.402
  ssbB/cilA Streptococcus mitis SK321

40.909

98.214

0.402
  ssbB Lactococcus lactis subsp. cremoris KW2

42.857

93.75

0.402
  ssbB/cilA Streptococcus mitis NCTC 12261

40

98.214

0.393

Multiple sequence alignment