Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   B34_RS12355 Genome accession   NZ_CP014793
Coordinates   2297652..2297999 (-) Length   115 a.a.
NCBI ID   WP_003185893.1    Uniprot ID   A0AB37GL97
Organism   Bacillus licheniformis strain SCDB 34     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2292652..2302999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B34_RS12325 (B34_02501) srlD 2293262..2294047 (-) 786 WP_003185881.1 sorbitol-6-phosphate dehydrogenase -
  B34_RS12330 (B34_02502) - 2294062..2294433 (-) 372 WP_003185882.1 PTS glucitol/sorbitol transporter subunit IIA -
  B34_RS12335 (B34_02503) - 2294458..2295465 (-) 1008 WP_003185884.1 PTS glucitol/sorbitol transporter subunit IIB -
  B34_RS12340 (B34_02504) - 2295483..2296031 (-) 549 WP_061565985.1 PTS glucitol/sorbitol transporter subunit IIC -
  B34_RS12345 (B34_02505) - 2296028..2296471 (-) 444 WP_003185888.1 transcriptional regulator GutM -
  B34_RS12350 (B34_02506) - 2296468..2297430 (-) 963 WP_003185891.1 sugar-binding transcriptional regulator -
  B34_RS12355 (B34_02507) ssbB 2297652..2297999 (-) 348 WP_003185893.1 single-stranded DNA-binding protein Machinery gene
  B34_RS12360 (B34_02508) - 2298105..2298476 (-) 372 WP_003185895.1 hypothetical protein -
  B34_RS12365 (B34_02509) - 2298658..2299071 (+) 414 WP_003185898.1 YwpF-like family protein -
  B34_RS12370 (B34_02510) mscL 2299112..2299492 (-) 381 WP_061565987.1 large conductance mechanosensitive channel protein MscL -
  B34_RS12375 (B34_02511) fabZ 2299562..2299996 (-) 435 WP_003185902.1 3-hydroxyacyl-ACP dehydratase FabZ -
  B34_RS12380 (B34_02512) - 2300190..2301017 (-) 828 WP_003185904.1 flagellar hook-basal body protein -
  B34_RS12385 (B34_02513) - 2301061..2301900 (-) 840 WP_003185907.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12753.44 Da        Isoelectric Point: 6.9538

>NTDB_id=174181 B34_RS12355 WP_003185893.1 2297652..2297999(-) (ssbB) [Bacillus licheniformis strain SCDB 34]
MFNEIMLVGRLTKDPELRYTSDGVPVANVTLAVSRPFKNAAGEVEADFVNCTLWRKTAVNTAEYCEKGSIIGLSGRIQTR
QYVNSEGERTFITEVVARSVRFLGESRKAHEPADA

Nucleotide


Download         Length: 348 bp        

>NTDB_id=174181 B34_RS12355 WP_003185893.1 2297652..2297999(-) (ssbB) [Bacillus licheniformis strain SCDB 34]
ATGTTTAATGAGATCATGCTCGTCGGGCGTTTGACAAAAGATCCCGAACTGCGGTATACATCTGACGGTGTCCCTGTTGC
AAATGTGACGCTGGCTGTCAGCAGGCCTTTCAAGAACGCAGCAGGCGAAGTAGAAGCGGACTTTGTCAATTGCACTCTAT
GGCGCAAAACTGCCGTGAACACAGCCGAATATTGCGAAAAAGGCTCCATCATCGGGCTGAGCGGAAGAATCCAGACCCGC
CAATACGTCAATTCAGAAGGCGAACGCACCTTTATTACAGAAGTTGTCGCCCGGTCAGTCAGATTTTTGGGAGAAAGCCG
GAAAGCGCATGAGCCGGCTGATGCTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

70.874

89.565

0.635
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.223

89.565

0.53
  ssb Latilactobacillus sakei subsp. sakei 23K

51.351

96.522

0.496
  ssbA Streptococcus mutans UA159

45.794

93.043

0.426
  ssbB Lactococcus lactis subsp. cremoris KW2

44.34

92.174

0.409
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.925

93.043

0.409
  ssbB/cilA Streptococcus mitis NCTC 12261

42.991

93.043

0.4
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.991

93.043

0.4
  ssbB/cilA Streptococcus pneumoniae Rx1

42.056

93.043

0.391
  ssbB/cilA Streptococcus pneumoniae D39

42.056

93.043

0.391
  ssbB/cilA Streptococcus pneumoniae R6

42.056

93.043

0.391
  ssbB/cilA Streptococcus mitis SK321

42.056

93.043

0.391

Multiple sequence alignment