Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | A0V43_RS13790 | Genome accession | NZ_CP014749 |
| Coordinates | 2812082..2812441 (-) | Length | 119 a.a. |
| NCBI ID | WP_011232661.1 | Uniprot ID | U2WRT9 |
| Organism | Geobacillus sp. JS12 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2807082..2817441
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A0V43_RS13770 (A0V43_13770) | - | 2808271..2809050 (-) | 780 | WP_063193355.1 | hypothetical protein | - |
| A0V43_RS13775 (A0V43_13775) | - | 2809330..2810681 (-) | 1352 | Protein_2835 | peptidoglycan-binding protein | - |
| A0V43_RS13780 (A0V43_13780) | - | 2810835..2811344 (-) | 510 | WP_063193356.1 | hypothetical protein | - |
| A0V43_RS13785 (A0V43_13785) | - | 2811553..2811960 (+) | 408 | WP_063193357.1 | helix-turn-helix transcriptional regulator | - |
| A0V43_RS13790 (A0V43_13790) | ssbB | 2812082..2812441 (-) | 360 | WP_011232661.1 | single-stranded DNA-binding protein | Machinery gene |
| A0V43_RS13795 (A0V43_13795) | - | 2812711..2813151 (+) | 441 | WP_013146485.1 | YwpF-like family protein | - |
| A0V43_RS13800 (A0V43_13800) | - | 2813208..2813837 (-) | 630 | WP_063193358.1 | class D sortase | - |
| A0V43_RS13805 (A0V43_13805) | - | 2813844..2814743 (-) | 900 | WP_063193359.1 | processed acidic surface protein | - |
| A0V43_RS13810 (A0V43_13810) | - | 2815123..2816499 (-) | 1377 | WP_063193360.1 | aspartate kinase | - |
| A0V43_RS13815 (A0V43_13815) | - | 2816955..2817389 (-) | 435 | WP_011232666.1 | DUF1284 domain-containing protein | - |
Sequence
Protein
Download Length: 119 a.a. Molecular weight: 13427.38 Da Isoelectric Point: 9.8293
>NTDB_id=173604 A0V43_RS13790 WP_011232661.1 2812082..2812441(-) (ssbB) [Geobacillus sp. JS12]
MRQHMINQVVLVGRLTKDPELRYTAEGAAVATVTLAVARNFRNAEGGIDADFVPCVLWRKTAEHTANYCRKGSMVAVTGR
IQTRRYDKKDGQRVYVTEVVAESVQFLHSGKKPEWPEHV
MRQHMINQVVLVGRLTKDPELRYTAEGAAVATVTLAVARNFRNAEGGIDADFVPCVLWRKTAEHTANYCRKGSMVAVTGR
IQTRRYDKKDGQRVYVTEVVAESVQFLHSGKKPEWPEHV
Nucleotide
Download Length: 360 bp
>NTDB_id=173604 A0V43_RS13790 WP_011232661.1 2812082..2812441(-) (ssbB) [Geobacillus sp. JS12]
ATGCGCCAACACATGATCAACCAAGTCGTGTTGGTCGGCCGGTTGACGAAAGATCCCGAGCTTCGCTACACGGCCGAAGG
GGCTGCCGTCGCGACTGTCACACTGGCGGTGGCCAGAAATTTCCGCAACGCGGAAGGGGGGATTGACGCCGATTTCGTTC
CATGCGTTTTATGGCGGAAAACGGCGGAACATACCGCCAATTATTGCCGAAAAGGTTCGATGGTGGCGGTGACGGGGAGA
ATCCAAACGCGCCGCTACGATAAAAAAGACGGTCAACGCGTCTATGTCACCGAAGTCGTCGCGGAGTCCGTCCAATTTCT
CCACTCCGGCAAGAAACCAGAATGGCCGGAGCACGTATAG
ATGCGCCAACACATGATCAACCAAGTCGTGTTGGTCGGCCGGTTGACGAAAGATCCCGAGCTTCGCTACACGGCCGAAGG
GGCTGCCGTCGCGACTGTCACACTGGCGGTGGCCAGAAATTTCCGCAACGCGGAAGGGGGGATTGACGCCGATTTCGTTC
CATGCGTTTTATGGCGGAAAACGGCGGAACATACCGCCAATTATTGCCGAAAAGGTTCGATGGTGGCGGTGACGGGGAGA
ATCCAAACGCGCCGCTACGATAAAAAAGACGGTCAACGCGTCTATGTCACCGAAGTCGTCGCGGAGTCCGTCCAATTTCT
CCACTCCGGCAAGAAACCAGAATGGCCGGAGCACGTATAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
67.961 |
86.555 |
0.588 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.385 |
87.395 |
0.571 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60 |
88.235 |
0.529 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
48.571 |
88.235 |
0.429 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
46.667 |
88.235 |
0.412 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
46.667 |
88.235 |
0.412 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
45.714 |
88.235 |
0.403 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
45.714 |
88.235 |
0.403 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
45.714 |
88.235 |
0.403 |
| ssbB/cilA | Streptococcus mitis SK321 |
45.714 |
88.235 |
0.403 |
| ssbA | Streptococcus mutans UA159 |
45.714 |
88.235 |
0.403 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
42.308 |
87.395 |
0.37 |