Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   BSR19_RS02535 Genome accession   NZ_CP018187
Coordinates   494739..496724 (+) Length   661 a.a.
NCBI ID   WP_156246450.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ICDC2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 489739..501724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR19_RS02515 (BSR19_02520) - 490075..490491 (+) 417 WP_002890211.1 F0F1 ATP synthase subunit epsilon -
  BSR19_RS02520 (BSR19_02525) ftsW 490750..492030 (+) 1281 WP_156246448.1 cell division peptidoglycan polymerase FtsW -
  BSR19_RS02525 (BSR19_02530) tuf 492267..493463 (+) 1197 WP_002890213.1 elongation factor Tu -
  BSR19_RS02530 (BSR19_02535) tpiA 493718..494476 (+) 759 WP_002890214.1 triose-phosphate isomerase -
  BSR19_RS02535 (BSR19_02540) recP/tkt 494739..496724 (+) 1986 WP_156246450.1 transketolase Machinery gene
  BSR19_RS02545 (BSR19_02550) tmk 497013..497642 (+) 630 WP_037599634.1 dTMP kinase -
  BSR19_RS02550 (BSR19_02555) - 497651..498526 (+) 876 WP_037599636.1 DNA polymerase III subunit delta' -
  BSR19_RS02555 (BSR19_02560) yaaT 498523..499329 (+) 807 WP_037599638.1 regulatory iron-sulfur-containing complex subunit RicT Regulator
  BSR19_RS02560 (BSR19_02565) yabA 499316..499636 (+) 321 WP_002887582.1 DNA replication initiation control protein YabA -
  BSR19_RS02565 (BSR19_02570) rsmI 499639..500505 (+) 867 WP_037599640.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 70975.67 Da        Isoelectric Point: 4.8035

>NTDB_id=173604 BSR19_RS02535 WP_156246450.1 494739..496724(+) (recP/tkt) [Streptococcus salivarius strain ICDC2]
MTFDAIDQMAVSTIRSLSIEAIQAANSGHPGLPMGAAPMAYVLWNHVMNVNPKTSRNWTNRDRFVLSAGHGSALLYSLLH
LSGYDVTMDDLKNFRQWGSKTPGHPEVNHTDGVEATSGPLGQGIANAVGMAMAEAHLAAKFNKPGFDIVDHYTYALHGDG
CLMEGVSQEAASLAGHLKLGKLVLLYDSNDISLDGPTSMAFTEDVKAKFEAYGWQHILVKDGNDLEAIAKAIEEAKAETD
KPSIIEVKTIIGYGAEGQGTSAVHGAPIGQDGIDHAKGVYGYDAPAFTVPDEVARRFEAGIKFRGEAAENAWQTKFAEYE
TAYPELAAEYKFAFANEPVHVNLNAHELGSAVASRVSSQQAIQQISEQVPSFWGGSADLSASNNTMVKAESDFQADNYAG
RNIWFGVREFAMAAAMNGIALHGGTRVYGGTFFVFSNYLLPAVRMAALQNLPVTYVMTHDSVAVGEDGPTHEPIEQLASV
RSMPYLNVIRPADGNETNAAWKRALAETERPTMLVLTRQNLPVLDGTAENAETGVNKGAYIISEAKGDLDGIIIATGSEV
KLALDTQAALEAEGVHVRVVSMPSQNLFDEQDAAYKEEVLPAAVTKRLAIEAGTSFGWGKYVGLAGKTLTIDTWGASAPG
DRIFKEYGFTVENASQLYKSL

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=173604 BSR19_RS02535 WP_156246450.1 494739..496724(+) (recP/tkt) [Streptococcus salivarius strain ICDC2]
ATGACTTTTGATGCAATTGACCAAATGGCGGTCAGCACTATTCGTTCGCTTTCGATCGAGGCAATTCAAGCCGCGAATTC
TGGGCACCCAGGTCTTCCTATGGGTGCAGCGCCAATGGCTTATGTGCTTTGGAACCATGTGATGAATGTCAATCCAAAGA
CTAGCCGTAACTGGACAAACCGTGACCGTTTTGTTCTTTCTGCTGGTCATGGTTCTGCCTTGCTTTATAGTCTATTGCAC
CTTTCTGGCTATGATGTGACAATGGACGACTTGAAGAATTTCCGTCAATGGGGCTCTAAGACTCCAGGTCACCCTGAAGT
TAACCATACTGATGGTGTTGAAGCAACATCAGGTCCTCTTGGTCAAGGGATTGCTAATGCTGTAGGTATGGCAATGGCTG
AAGCACACTTGGCAGCTAAATTTAACAAACCTGGTTTTGATATTGTTGACCATTATACTTATGCCCTCCATGGCGATGGT
TGTTTGATGGAAGGTGTTTCTCAAGAAGCTGCCAGTCTTGCTGGTCACCTTAAACTTGGTAAGTTGGTGCTTCTTTACGA
TTCAAATGATATCTCACTTGATGGACCAACTTCAATGGCTTTCACAGAAGATGTTAAGGCAAAGTTTGAAGCTTATGGTT
GGCAACACATTCTTGTCAAAGATGGTAATGATTTGGAAGCTATTGCTAAAGCCATCGAAGAAGCTAAGGCTGAGACAGAT
AAACCATCTATCATTGAAGTTAAGACAATCATTGGTTATGGAGCTGAAGGGCAAGGAACATCAGCTGTCCACGGTGCTCC
AATTGGTCAAGATGGCATTGATCACGCAAAAGGTGTTTACGGTTATGATGCACCGGCATTTACAGTTCCAGATGAAGTTG
CTCGTCGTTTTGAAGCTGGTATTAAATTCCGTGGTGAAGCTGCTGAAAATGCTTGGCAAACTAAATTTGCAGAATATGAA
ACTGCTTACCCAGAATTGGCTGCTGAATACAAGTTTGCCTTTGCAAATGAACCTGTACACGTTAACTTGAATGCTCATGA
ATTGGGTTCAGCAGTAGCTAGCCGTGTATCAAGCCAACAAGCTATCCAACAGATTTCTGAACAAGTTCCTTCATTCTGGG
GAGGTTCAGCAGACCTTTCAGCTTCTAACAATACTATGGTTAAGGCTGAGTCTGATTTCCAAGCAGACAACTATGCTGGA
CGTAATATTTGGTTTGGTGTGCGTGAGTTTGCTATGGCTGCAGCGATGAATGGTATTGCTCTTCATGGTGGTACTCGTGT
TTATGGTGGTACCTTCTTCGTCTTCTCAAACTACTTGCTTCCAGCAGTACGTATGGCAGCTCTTCAAAACCTGCCAGTAA
CTTATGTAATGACACACGACTCAGTAGCAGTTGGTGAAGATGGACCTACTCACGAACCAATCGAACAATTGGCAAGTGTG
CGTTCAATGCCTTACCTTAACGTTATCCGTCCTGCAGATGGTAATGAAACTAATGCTGCATGGAAACGTGCCTTGGCTGA
GACTGAACGTCCAACAATGCTAGTCTTGACGCGTCAAAACTTGCCAGTCCTTGATGGTACTGCTGAAAATGCTGAAACTG
GTGTCAATAAAGGAGCTTACATCATCTCAGAAGCAAAAGGTGATCTTGATGGTATCATCATTGCCACTGGTTCTGAAGTG
AAATTGGCTCTTGATACGCAGGCTGCTCTTGAAGCTGAAGGTGTGCATGTTCGTGTTGTTTCAATGCCATCACAAAACCT
CTTTGATGAACAAGATGCCGCATATAAAGAAGAAGTCCTTCCAGCAGCTGTGACAAAACGTTTGGCTATCGAAGCTGGAA
CTAGCTTTGGTTGGGGCAAATACGTTGGTCTTGCAGGTAAAACACTTACTATTGATACTTGGGGTGCCTCAGCACCTGGT
GACCGTATCTTTAAAGAATATGGTTTCACTGTTGAAAATGCAAGTCAACTTTACAAATCATTGTAA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(6-331)

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-522)

Transketolase, C-terminal domain (Transketolase_C)

(552-652)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

56.383

99.546

0.561

Multiple sequence alignment