Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   GT3570_RS15645 Genome accession   NZ_CP014335
Coordinates   3101363..3101722 (-) Length   119 a.a.
NCBI ID   WP_011232661.1    Uniprot ID   U2WRT9
Organism   Geobacillus thermoleovorans strain KCTC 3570     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 3084987..3107474 3101363..3101722 within 0


Gene organization within MGE regions


Location: 3084987..3107474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GT3570_RS15560 (GT3570_15560) istB 3084987..3085739 (-) 753 WP_011230286.1 IS21-like element helper ATPase IstB -
  GT3570_RS15565 (GT3570_15565) istA 3085736..3087241 (-) 1506 WP_011230285.1 IS21 family transposase -
  GT3570_RS15570 (GT3570_15570) - 3087383..3087889 (+) 507 Protein_3092 IS982-like element ISGsp1 family transposase -
  GT3570_RS15575 (GT3570_15575) istB 3087893..3088624 (-) 732 WP_062898979.1 IS21-like element helper ATPase IstB -
  GT3570_RS15580 (GT3570_15580) - 3088621..3089283 (-) 663 WP_062898980.1 Mu transposase domain-containing protein -
  GT3570_RS19200 (GT3570_15585) - 3089494..3090057 (+) 564 WP_011229674.1 DUF6431 domain-containing protein -
  GT3570_RS15590 (GT3570_15590) - 3090200..3090505 (+) 306 Protein_3096 helix-turn-helix domain-containing protein -
  GT3570_RS15595 (GT3570_15595) - 3090580..3090906 (+) 327 WP_011229672.1 transposase -
  GT3570_RS15600 (GT3570_15600) - 3090885..3091766 (+) 882 Protein_3098 IS3 family transposase -
  GT3570_RS15605 (GT3570_15605) - 3091946..3092890 (+) 945 Protein_3099 DDE-type integrase/transposase/recombinase -
  GT3570_RS15610 (GT3570_15610) - 3092883..3093683 (+) 801 WP_011229854.1 ExeA family protein -
  GT3570_RS15615 (GT3570_15615) - 3093926..3094435 (-) 510 WP_062898981.1 RadC family protein -
  GT3570_RS15620 (GT3570_15620) - 3094739..3097381 (-) 2643 WP_062898982.1 Ig-like domain-containing protein -
  GT3570_RS15625 (GT3570_15625) - 3097754..3098533 (-) 780 WP_062898983.1 hypothetical protein -
  GT3570_RS15630 (GT3570_15630) - 3098579..3099934 (-) 1356 WP_062898984.1 peptidoglycan-binding protein -
  GT3570_RS15635 (GT3570_15635) - 3100117..3100626 (-) 510 WP_011232659.1 hypothetical protein -
  GT3570_RS15640 (GT3570_15640) - 3100835..3101242 (+) 408 WP_062898985.1 helix-turn-helix domain-containing protein -
  GT3570_RS15645 (GT3570_15645) ssbB 3101363..3101722 (-) 360 WP_011232661.1 single-stranded DNA-binding protein Machinery gene
  GT3570_RS15650 (GT3570_15650) - 3101992..3102432 (+) 441 WP_013146485.1 YwpF-like family protein -
  GT3570_RS15655 (GT3570_15655) - 3102489..3103118 (-) 630 WP_014196837.1 class D sortase -
  GT3570_RS15660 (GT3570_15660) - 3103125..3104024 (-) 900 WP_062898986.1 processed acidic surface protein -
  GT3570_RS15665 (GT3570_15665) - 3104405..3105781 (-) 1377 WP_042379307.1 aspartate kinase -
  GT3570_RS15675 (GT3570_15675) - 3106059..3106493 (-) 435 WP_025039145.1 DUF1284 domain-containing protein -
  GT3570_RS15680 (GT3570_15680) - 3106887..3107474 (+) 588 WP_014196843.1 hypothetical protein -

Sequence

Protein


Download         Length: 119 a.a.        Molecular weight: 13427.38 Da        Isoelectric Point: 9.8293

>NTDB_id=170421 GT3570_RS15645 WP_011232661.1 3101363..3101722(-) (ssbB) [Geobacillus thermoleovorans strain KCTC 3570]
MRQHMINQVVLVGRLTKDPELRYTAEGAAVATVTLAVARNFRNAEGGIDADFVPCVLWRKTAEHTANYCRKGSMVAVTGR
IQTRRYDKKDGQRVYVTEVVAESVQFLHSGKKPEWPEHV

Nucleotide


Download         Length: 360 bp        

>NTDB_id=170421 GT3570_RS15645 WP_011232661.1 3101363..3101722(-) (ssbB) [Geobacillus thermoleovorans strain KCTC 3570]
ATGCGCCAACACATGATCAACCAAGTCGTGTTGGTCGGCCGGTTGACGAAAGATCCCGAGCTTCGCTACACGGCCGAAGG
GGCTGCCGTCGCGACTGTCACGCTGGCGGTGGCGAGAAATTTCCGCAACGCGGAAGGGGGGATTGACGCCGATTTCGTTC
CATGCGTTTTATGGCGGAAAACAGCGGAACATACCGCCAATTATTGCCGAAAAGGATCGATGGTGGCGGTGACGGGGAGA
ATCCAAACGCGCCGCTACGATAAAAAAGACGGTCAACGCGTCTATGTCACCGAAGTCGTCGCGGAGTCCGTCCAATTTCT
CCACTCCGGAAAGAAACCAGAATGGCCGGAGCACGTATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2WRT9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

67.961

86.555

0.588
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.385

87.395

0.571
  ssb Latilactobacillus sakei subsp. sakei 23K

60

88.235

0.529
  ssbB Streptococcus sobrinus strain NIDR 6715-7

48.571

88.235

0.429
  ssbB/cilA Streptococcus pneumoniae TIGR4

46.667

88.235

0.412
  ssbB/cilA Streptococcus mitis NCTC 12261

46.667

88.235

0.412
  ssbB/cilA Streptococcus pneumoniae Rx1

45.714

88.235

0.403
  ssbB/cilA Streptococcus pneumoniae D39

45.714

88.235

0.403
  ssbB/cilA Streptococcus pneumoniae R6

45.714

88.235

0.403
  ssbB/cilA Streptococcus mitis SK321

45.714

88.235

0.403
  ssbA Streptococcus mutans UA159

45.714

88.235

0.403
  ssbB Lactococcus lactis subsp. cremoris KW2

42.308

87.395

0.37

Multiple sequence alignment