Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AXW78_RS10535 Genome accession   NZ_CP014282
Coordinates   2057758..2058093 (+) Length   111 a.a.
NCBI ID   WP_061884112.1    Uniprot ID   A0A9W3YFK7
Organism   Bacillus thuringiensis strain Bt185     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2052758..2063093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXW78_RS10510 (AXW78_10510) - 2053019..2053780 (-) 762 WP_061884110.1 hypothetical protein -
  AXW78_RS10515 (AXW78_10515) - 2053890..2054537 (+) 648 WP_000165966.1 HD domain-containing protein -
  AXW78_RS10520 (AXW78_10520) - 2054534..2056429 (+) 1896 WP_061884111.1 ABC-F family ATP-binding cassette domain-containing protein -
  AXW78_RS10525 (AXW78_10525) - 2056505..2057236 (+) 732 WP_001260655.1 Bax inhibitor-1/YccA family protein -
  AXW78_RS10530 (AXW78_10530) - 2057342..2057596 (+) 255 WP_000975138.1 DUF4318 domain-containing protein -
  AXW78_RS10535 (AXW78_10535) ssbA 2057758..2058093 (+) 336 WP_061884112.1 single-stranded DNA-binding protein Machinery gene
  AXW78_RS10540 (AXW78_10540) - 2058365..2058693 (-) 329 Protein_2040 6-aminohexanoate hydrolase -
  AXW78_RS10545 (AXW78_10545) - 2059189..2060316 (+) 1128 WP_000692564.1 conserved virulence factor C family protein -
  AXW78_RS10550 (AXW78_10550) - 2060320..2060703 (+) 384 WP_061884113.1 DUF393 domain-containing protein -
  AXW78_RS10555 (AXW78_10555) - 2060787..2061221 (+) 435 WP_000063706.1 BrxA/BrxB family bacilliredoxin -
  AXW78_RS10560 (AXW78_10560) - 2061270..2062046 (+) 777 WP_000637438.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12784.61 Da        Isoelectric Point: 9.4344

>NTDB_id=170188 AXW78_RS10535 WP_061884112.1 2057758..2058093(+) (ssbA) [Bacillus thuringiensis strain Bt185]
MMNRVVLIGRLTKEPELYYTKQGVAYARICVAVNRGFRNSLGEQQVDFINCQIWRKSAENVAEYCKKGSLVGITGRIQTS
NYDDEQGKRIYRTEVVIESITFLERRREGAS

Nucleotide


Download         Length: 336 bp        

>NTDB_id=170188 AXW78_RS10535 WP_061884112.1 2057758..2058093(+) (ssbA) [Bacillus thuringiensis strain Bt185]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAACAAGGCGTCGCTTATGC
ACGAATATGTGTTGCGGTGAATAGAGGATTTCGAAATAGTTTAGGTGAACAACAAGTCGATTTTATTAATTGTCAGATAT
GGCGCAAATCGGCTGAGAATGTAGCTGAATATTGTAAGAAGGGGTCGCTCGTTGGGATTACAGGGCGTATTCAGACTAGT
AATTACGATGATGAACAAGGCAAGAGAATATATAGAACTGAAGTTGTGATTGAGAGTATTACCTTTTTGGAGAGAAGGCG
GGAGGGGGCATCGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.491

95.495

0.559
  ssb Latilactobacillus sakei subsp. sakei 23K

56.604

95.495

0.541
  ssbB Bacillus subtilis subsp. subtilis str. 168

51.786

100

0.523
  ssbB Lactococcus lactis subsp. cremoris KW2

45.714

94.595

0.432
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.727

99.099

0.423
  ssbA Streptococcus mutans UA159

40

99.099

0.396
  ssbB/cilA Streptococcus mitis NCTC 12261

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae TIGR4

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae D39

39.091

99.099

0.387
  ssbB/cilA Streptococcus pneumoniae R6

39.091

99.099

0.387
  ssbB/cilA Streptococcus mitis SK321

39.091

99.099

0.387
  ssbB/cilA Streptococcus pneumoniae Rx1

39.091

99.099

0.387

Multiple sequence alignment