Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AUP74_RS16670 Genome accession   NZ_CP014143
Coordinates   3807173..3808384 (+) Length   403 a.a.
NCBI ID   WP_069948548.1    Uniprot ID   A0A1C9WC50
Organism   Microbulbifer aggregans strain CCB-MM1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3802173..3813384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUP74_RS16650 (AUP74_03352) pilE 3802426..3802962 (-) 537 WP_269465979.1 pilin Machinery gene
  AUP74_RS16655 (AUP74_03353) tfpZ 3803445..3804245 (-) 801 WP_158514578.1 TfpX/TfpZ family type IV pilin accessory protein -
  AUP74_RS16660 (AUP74_03354) pilE 3804263..3804799 (-) 537 WP_069948983.1 pilin Machinery gene
  AUP74_RS16665 (AUP74_03355) pilB 3805352..3807064 (+) 1713 WP_069948547.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AUP74_RS16670 (AUP74_03356) pilC 3807173..3808384 (+) 1212 WP_069948548.1 type II secretion system F family protein Machinery gene
  AUP74_RS16675 (AUP74_03357) - 3808398..3809282 (+) 885 WP_069948549.1 prepilin peptidase -
  AUP74_RS16680 (AUP74_03358) coaE 3809366..3809977 (+) 612 WP_069948550.1 dephospho-CoA kinase -
  AUP74_RS16685 (AUP74_03359) yacG 3809984..3810208 (+) 225 WP_069948551.1 DNA gyrase inhibitor YacG -
  AUP74_RS16690 (AUP74_03360) mutT 3810378..3810782 (-) 405 WP_069948552.1 8-oxo-dGTP diphosphatase MutT -
  AUP74_RS17520 - 3810973..3811104 (-) 132 WP_257785519.1 hypothetical protein -
  AUP74_RS16695 (AUP74_03362) argJ 3811206..3812420 (-) 1215 WP_418287624.1 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 43366.97 Da        Isoelectric Point: 9.2721

>NTDB_id=168707 AUP74_RS16670 WP_069948548.1 3807173..3808384(+) (pilC) [Microbulbifer aggregans strain CCB-MM1]
MANATAVAYVYKGVDNKGNKVEGEINGTNPALIKAQLRKQGIIASKVQKKPKPLFGGNKKIKPADIALFTRQMATMMKAG
VPLVQSFEIVADGLDNEGVKGLIFKVRDDVASGTSFAEALRKHPLYFDDLFCNLVASGEQSGALETMLDRIATYKEKTES
LKAKIKKAMTYPIAVIVVAIVVTSILLIKVVPQFAETFSSFGADLPAFTQLVVGMSEWMQANWFFALVTIIVLIGGTLEA
KKRNKNVAHLFDRLILKTPIFGAITYNAITARFARTLSTTFAAGVPLIDALKSVAGATGNSVYEEATLKIRDAVATGIPL
NVAVRSSGLYPSMLIQMAAIGEESGALDDMLSKAADFYEEAVDNMVDNLTTLLEPMIMAVLGILVGGLMIAMYLPIFQLG
QVV

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=168707 AUP74_RS16670 WP_069948548.1 3807173..3808384(+) (pilC) [Microbulbifer aggregans strain CCB-MM1]
ATGGCCAATGCCACCGCAGTCGCTTATGTCTACAAGGGCGTGGACAATAAAGGCAACAAGGTCGAGGGAGAGATCAACGG
CACCAACCCCGCACTGATCAAGGCACAGTTGCGTAAGCAAGGAATTATTGCCAGCAAAGTCCAGAAAAAACCAAAGCCGC
TTTTCGGCGGCAATAAGAAGATCAAGCCCGCCGATATTGCTCTTTTCACACGGCAGATGGCTACTATGATGAAAGCCGGT
GTGCCGCTAGTGCAGAGCTTCGAAATCGTAGCCGATGGTCTAGATAACGAGGGAGTGAAGGGGCTAATCTTTAAGGTTCG
GGATGACGTAGCCTCCGGCACTTCTTTTGCTGAAGCATTGCGCAAGCACCCCCTGTACTTTGATGATCTGTTCTGCAATC
TGGTGGCCTCCGGAGAACAATCAGGTGCCCTGGAAACCATGTTGGACCGGATCGCCACCTACAAGGAGAAAACAGAGTCA
CTTAAGGCCAAGATCAAGAAGGCAATGACCTATCCTATCGCGGTTATCGTGGTAGCCATTGTGGTGACCTCAATTCTCCT
GATCAAAGTTGTCCCACAGTTTGCTGAGACCTTTTCCAGTTTTGGCGCCGACTTGCCTGCCTTTACTCAGTTAGTGGTAG
GCATGTCGGAGTGGATGCAAGCTAACTGGTTCTTCGCCCTGGTAACGATAATCGTCCTGATTGGCGGCACTCTTGAAGCT
AAAAAGCGCAATAAAAATGTTGCCCATCTTTTTGATCGGCTGATCCTAAAAACGCCGATTTTTGGGGCCATCACATACAA
CGCAATTACTGCTCGCTTCGCCCGCACCCTATCAACGACATTCGCCGCAGGTGTTCCTTTGATTGACGCGCTAAAATCCG
TAGCAGGTGCCACAGGAAATAGTGTTTACGAAGAGGCCACACTCAAAATTAGAGATGCGGTGGCAACCGGTATTCCCCTA
AATGTAGCAGTGAGAAGCTCCGGCCTTTATCCCTCCATGCTGATTCAAATGGCTGCTATTGGTGAGGAATCCGGTGCGCT
AGACGACATGCTTTCTAAAGCTGCGGATTTCTACGAAGAAGCCGTAGACAATATGGTCGATAACCTCACCACACTTCTTG
AACCGATGATCATGGCGGTTCTTGGTATCCTTGTCGGTGGCTTGATGATTGCCATGTACCTGCCGATCTTCCAGCTGGGC
CAGGTGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(69-192)

Type II secretion system (T2SS), protein F (T2SSF)

(273-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C9WC50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

63.291

98.015

0.62
  pilC Acinetobacter baylyi ADP1

62.217

98.511

0.613
  pilC Acinetobacter baumannii D1279779

61.209

98.511

0.603
  pilC Legionella pneumophila strain ERS1305867

57.035

98.759

0.563
  pilG Neisseria gonorrhoeae MS11

43.434

98.263

0.427
  pilG Neisseria meningitidis 44/76-A

43.182

98.263

0.424
  pilC Vibrio campbellii strain DS40M4

40.955

98.759

0.404
  pilC Vibrio cholerae strain A1552

40.909

98.263

0.402
  pilC Thermus thermophilus HB27

35.252

100

0.365

Multiple sequence alignment