Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | AL542_RS07470 | Genome accession | NZ_CP014056 |
| Coordinates | 827758..828186 (+) | Length | 142 a.a. |
| NCBI ID | WP_040528180.1 | Uniprot ID | - |
| Organism | Grimontia hollisae strain FDAARGOS_111 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 822758..833186
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AL542_RS07455 (AL542_07365) | pdhR | 824810..825583 (-) | 774 | WP_005502094.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| AL542_RS07460 (AL542_07370) | ampD | 825891..826433 (-) | 543 | WP_005502096.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| AL542_RS07465 (AL542_07375) | nadC | 826625..827530 (+) | 906 | WP_005502097.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| AL542_RS07470 (AL542_07380) | pilA | 827758..828186 (+) | 429 | WP_040528180.1 | pilin | Machinery gene |
| AL542_RS07475 (AL542_07385) | pilB | 828208..829902 (+) | 1695 | WP_005502102.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| AL542_RS07480 (AL542_07390) | pilC | 829914..831137 (+) | 1224 | WP_005502104.1 | type II secretion system F family protein | Machinery gene |
| AL542_RS07485 (AL542_07395) | pilD | 831245..832114 (+) | 870 | WP_005502106.1 | prepilin peptidase | Machinery gene |
| AL542_RS07490 (AL542_07400) | coaE | 832118..832741 (+) | 624 | WP_005502108.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 14757.72 Da Isoelectric Point: 4.0338
>NTDB_id=168121 AL542_RS07470 WP_040528180.1 827758..828186(+) (pilA) [Grimontia hollisae strain FDAARGOS_111]
MKKQQGFSLVELMIVVAIIGALTAFAIPAYQDYVQRSEAMAGLATLKSLQTPAQLEEQETGVFPTSLADIGARSNMNALG
TVSLVAATAGDDATSAGLQFAFDATNSSLGGLILTTRLENTGWDCTPSGTIPTGLDLEGCRQ
MKKQQGFSLVELMIVVAIIGALTAFAIPAYQDYVQRSEAMAGLATLKSLQTPAQLEEQETGVFPTSLADIGARSNMNALG
TVSLVAATAGDDATSAGLQFAFDATNSSLGGLILTTRLENTGWDCTPSGTIPTGLDLEGCRQ
Nucleotide
Download Length: 429 bp
>NTDB_id=168121 AL542_RS07470 WP_040528180.1 827758..828186(+) (pilA) [Grimontia hollisae strain FDAARGOS_111]
ATGAAAAAGCAACAGGGTTTTAGTTTGGTTGAACTGATGATTGTGGTTGCAATTATCGGTGCGCTGACAGCGTTTGCTAT
TCCTGCGTATCAGGATTACGTACAGCGTTCTGAAGCAATGGCAGGATTAGCAACACTTAAATCGCTGCAAACTCCAGCTC
AACTTGAAGAGCAAGAAACCGGAGTTTTCCCCACAAGCTTGGCTGATATTGGAGCACGTTCAAATATGAATGCTCTAGGT
ACAGTATCACTAGTGGCGGCTACTGCAGGTGATGACGCTACAAGTGCTGGTTTACAGTTTGCTTTTGATGCTACAAATTC
TTCTTTGGGCGGGCTCATTTTGACTACTAGACTAGAAAATACTGGCTGGGATTGCACTCCTTCAGGAACAATTCCTACAG
GCCTAGATTTAGAAGGCTGTCGTCAATAG
ATGAAAAAGCAACAGGGTTTTAGTTTGGTTGAACTGATGATTGTGGTTGCAATTATCGGTGCGCTGACAGCGTTTGCTAT
TCCTGCGTATCAGGATTACGTACAGCGTTCTGAAGCAATGGCAGGATTAGCAACACTTAAATCGCTGCAAACTCCAGCTC
AACTTGAAGAGCAAGAAACCGGAGTTTTCCCCACAAGCTTGGCTGATATTGGAGCACGTTCAAATATGAATGCTCTAGGT
ACAGTATCACTAGTGGCGGCTACTGCAGGTGATGACGCTACAAGTGCTGGTTTACAGTTTGCTTTTGATGCTACAAATTC
TTCTTTGGGCGGGCTCATTTTGACTACTAGACTAGAAAATACTGGCTGGGATTGCACTCCTTCAGGAACAATTCCTACAG
GCCTAGATTTAGAAGGCTGTCGTCAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
51.429 |
98.592 |
0.507 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
37.931 |
100 |
0.387 |
| pilA2 | Legionella pneumophila str. Paris |
37.241 |
100 |
0.38 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
39.85 |
93.662 |
0.373 |
| pilA | Pseudomonas aeruginosa PAK |
38.686 |
96.479 |
0.373 |
| pilA | Vibrio cholerae C6706 |
34.667 |
100 |
0.366 |
| pilA | Vibrio cholerae strain A1552 |
34.667 |
100 |
0.366 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
34.667 |
100 |
0.366 |