Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AL542_RS07480 Genome accession   NZ_CP014056
Coordinates   829914..831137 (+) Length   407 a.a.
NCBI ID   WP_005502104.1    Uniprot ID   D0I4W0
Organism   Grimontia hollisae strain FDAARGOS_111     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 824914..836137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL542_RS07460 (AL542_07370) ampD 825891..826433 (-) 543 WP_005502096.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  AL542_RS07465 (AL542_07375) nadC 826625..827530 (+) 906 WP_005502097.1 carboxylating nicotinate-nucleotide diphosphorylase -
  AL542_RS07470 (AL542_07380) pilA 827758..828186 (+) 429 WP_040528180.1 pilin Machinery gene
  AL542_RS07475 (AL542_07385) pilB 828208..829902 (+) 1695 WP_005502102.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AL542_RS07480 (AL542_07390) pilC 829914..831137 (+) 1224 WP_005502104.1 type II secretion system F family protein Machinery gene
  AL542_RS07485 (AL542_07395) pilD 831245..832114 (+) 870 WP_005502106.1 prepilin peptidase Machinery gene
  AL542_RS07490 (AL542_07400) coaE 832118..832741 (+) 624 WP_005502108.1 dephospho-CoA kinase -
  AL542_RS07495 (AL542_07405) zapD 832731..833471 (+) 741 WP_005502110.1 cell division protein ZapD -
  AL542_RS07500 (AL542_07410) yacG 833506..833703 (+) 198 WP_040528217.1 DNA gyrase inhibitor YacG -
  AL542_RS07510 (AL542_07415) mutT 833934..834338 (-) 405 WP_005502113.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45026.91 Da        Isoelectric Point: 10.1014

>NTDB_id=168123 AL542_RS07480 WP_005502104.1 829914..831137(+) (pilC) [Grimontia hollisae strain FDAARGOS_111]
MATSSHKLFSYQWRGVTSKGAKVKGQTLAYSEQEARQALQEQRIRLDKIKKRSPSSWVRRKNAANAKDITLFSRQMATML
EAGVPLGETLRLLKASAKKAEMKFILGQIYSHIEAGSSLAQAMKTSSPLFDQFYCDLVATGEQTGHLEQIFARICVYREK
SEETRAKVIKAMIYPSIVCFLAILVTVGMLIFVIPTFKDVFSSFGAELPWFTRKVLGISDAIQLYGIYMLLALFIAVACV
RLGVTKSDKFRLRASRFSLQIPVIGDVLTKATISRFTRTLATTFSAGIPLLNGLSAAGKTANNTHYQRVIEEVHKQTSGG
RPLHRAIKETGQFPDMMIQMVMIGEESGALDDMLNKVAGIYEADVDNTVDNLGKILEPMIIVVLGVLIGSLVVAMYLPMF
NLMSVMG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=168123 AL542_RS07480 WP_005502104.1 829914..831137(+) (pilC) [Grimontia hollisae strain FDAARGOS_111]
ATGGCCACCAGTTCCCATAAACTTTTCTCTTACCAGTGGCGCGGTGTGACGTCGAAAGGCGCCAAAGTCAAAGGCCAGAC
ACTGGCATACTCCGAGCAGGAAGCCAGACAGGCACTGCAGGAGCAGCGGATCCGGCTGGATAAAATCAAAAAGCGCTCGC
CCTCTTCCTGGGTACGGCGTAAAAATGCTGCCAACGCCAAAGACATTACCCTTTTCTCGCGCCAGATGGCGACCATGCTG
GAAGCGGGTGTGCCGCTGGGAGAAACCCTCAGGCTGCTGAAAGCCAGCGCCAAAAAAGCAGAAATGAAATTTATCCTCGG
CCAGATATACAGCCACATTGAAGCGGGATCGTCACTGGCGCAGGCAATGAAAACCAGTTCCCCTCTTTTTGACCAGTTCT
ACTGCGATCTGGTGGCAACCGGTGAACAGACCGGACATTTGGAGCAGATTTTTGCCCGTATCTGTGTCTACCGGGAAAAA
AGTGAGGAAACCAGAGCCAAAGTCATCAAAGCGATGATTTACCCATCGATTGTCTGTTTTCTCGCGATCCTTGTTACCGT
CGGCATGCTGATCTTCGTGATCCCAACGTTCAAAGATGTCTTTTCATCGTTTGGGGCCGAACTACCCTGGTTTACCCGTA
AAGTGCTGGGCATTTCAGATGCTATCCAGCTTTACGGCATTTATATGCTGCTGGCTCTGTTTATCGCTGTAGCCTGTGTT
CGGCTTGGCGTCACCAAAAGCGATAAATTCCGGCTCAGGGCCAGCCGGTTTTCCCTGCAAATCCCGGTGATCGGAGACGT
GCTGACCAAAGCCACTATTTCCCGTTTTACCCGCACTCTGGCTACCACATTCAGTGCCGGTATTCCCTTACTCAATGGCT
TATCGGCAGCCGGTAAAACCGCCAACAACACTCACTACCAACGGGTAATCGAAGAGGTCCATAAACAGACATCCGGCGGC
CGTCCGCTCCACCGCGCCATCAAAGAAACCGGACAGTTTCCCGATATGATGATCCAGATGGTGATGATTGGTGAAGAGTC
CGGCGCCTTGGATGACATGCTGAACAAAGTCGCCGGCATCTATGAGGCTGATGTTGATAACACGGTCGACAACCTTGGCA
AAATCCTTGAGCCGATGATCATCGTTGTGCTCGGGGTGTTGATAGGTTCCCTGGTGGTTGCCATGTATCTGCCTATGTTC
AACCTGATGAGCGTCATGGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D0I4W0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

52.709

99.754

0.526
  pilC Vibrio campbellii strain DS40M4

51.351

100

0.514
  pilC Pseudomonas stutzeri DSM 10701

42.015

100

0.42
  pilG Neisseria gonorrhoeae MS11

40.15

98.526

0.396
  pilC Acinetobacter baylyi ADP1

39.753

99.509

0.396
  pilC Acinetobacter baumannii D1279779

40.452

97.789

0.396
  pilG Neisseria meningitidis 44/76-A

40.625

94.349

0.383
  pilC Legionella pneumophila strain ERS1305867

38.366

99.263

0.381

Multiple sequence alignment