Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AL549_RS21975 Genome accession   NZ_CP014049
Coordinates   2872989..2874092 (+) Length   367 a.a.
NCBI ID   WP_061059019.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FDAARGOS_119     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2867989..2879092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL549_RS21955 (AL549_20390) rsmB 2868898..2870178 (-) 1281 WP_061059018.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  AL549_RS21960 (AL549_20395) fmt 2870262..2871209 (-) 948 WP_011079080.1 methionyl-tRNA formyltransferase -
  AL549_RS21965 (AL549_20400) def 2871241..2871753 (-) 513 WP_011079081.1 peptide deformylase -
  AL549_RS21970 (AL549_20405) - 2871892..2872989 (+) 1098 WP_060532894.1 LysM peptidoglycan-binding domain-containing protein -
  AL549_RS21975 (AL549_20410) dprA 2872989..2874092 (+) 1104 WP_061059019.1 DNA-processing protein DprA Machinery gene
  AL549_RS21980 (AL549_20415) - 2874095..2874574 (+) 480 WP_011079084.1 DUF494 family protein -
  AL549_RS21985 (AL549_20420) - 2874598..2875167 (+) 570 WP_061059020.1 type I DNA topoisomerase -
  AL549_RS21990 (AL549_20425) - 2875232..2876365 (-) 1134 WP_013570890.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  AL549_RS21995 (AL549_20430) purE 2876369..2876854 (-) 486 WP_011079087.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  AL549_RS22000 (AL549_20435) - 2877035..2877592 (+) 558 WP_045598849.1 L-threonylcarbamoyladenylate synthase -
  AL549_RS22005 (AL549_20440) hemF 2877621..2878538 (+) 918 WP_039555003.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 39490.99 Da        Isoelectric Point: 6.9045

>NTDB_id=168038 AL549_RS21975 WP_061059019.1 2872989..2874092(+) (dprA) [Vibrio vulnificus strain FDAARGOS_119]
MSQDELHAWLALSFTPNIGVKKLTKLLSIDSPLNILRYSQEQLLSLGLSSQQIITLRSSAQQDAEAALQWQQLSSQHHIL
TLHDGLYPPLLKETASPPCQLFVQGDPHCLTKPQIALVGSRHATMQGLQHARDFAAQLVQHGLVVTSGLALGIDGHAHDG
ALTAGGETVAVLGSGFQHIYPARHKGLAARIGQQGALVSEFRPNTKAKAEHFPRRNRIISGLSLGVLVVEAAEKSGSLIT
ARYAAEQGREVFALPNSLHITNARGGNLLIKSGACLVTGVEDVLSEVQTLLDWSTNQQADLFSSSNTEEQLPFPQLLANV
GNEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVNGGYIRRGRG

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=168038 AL549_RS21975 WP_061059019.1 2872989..2874092(+) (dprA) [Vibrio vulnificus strain FDAARGOS_119]
ATGAGTCAAGATGAACTGCATGCTTGGTTAGCACTCAGTTTTACGCCCAATATTGGGGTTAAGAAGTTAACCAAGTTACT
CAGTATTGATTCCCCGCTCAATATTCTGCGTTATTCCCAAGAGCAGCTACTGTCGCTGGGACTGTCGTCCCAGCAAATCA
TCACCTTGCGAAGTAGTGCTCAGCAAGACGCTGAAGCCGCCCTTCAATGGCAGCAGCTCTCCTCCCAGCATCATATTCTT
ACCCTTCATGATGGCTTATATCCGCCGCTGCTTAAGGAAACAGCTTCACCGCCTTGCCAACTGTTTGTTCAGGGTGATCC
TCATTGTTTAACCAAGCCACAAATTGCGCTGGTGGGGAGTCGTCATGCGACCATGCAAGGGTTGCAGCATGCCCGCGATT
TTGCGGCTCAACTGGTACAGCATGGGTTGGTGGTGACCAGTGGTTTAGCGCTTGGGATTGATGGCCATGCCCATGATGGT
GCGCTGACAGCGGGAGGCGAAACCGTTGCCGTTCTTGGTTCGGGCTTTCAACATATTTATCCCGCTCGCCACAAAGGCCT
TGCCGCGAGAATTGGTCAGCAAGGTGCGCTGGTTTCGGAGTTTCGTCCCAATACGAAAGCCAAAGCCGAACACTTTCCTC
GTCGAAATCGAATCATTAGTGGCTTGTCTCTGGGGGTTTTAGTGGTCGAAGCGGCAGAGAAAAGCGGTTCTTTGATTACC
GCCCGTTATGCCGCTGAGCAAGGCCGAGAAGTCTTTGCTTTGCCTAACTCTCTCCATATTACCAATGCACGCGGCGGAAA
CTTGCTGATAAAAAGCGGAGCGTGTTTGGTCACTGGGGTTGAAGATGTGCTGAGTGAAGTGCAAACCTTGCTCGACTGGT
CGACAAACCAACAAGCGGATTTATTTTCTTCCTCTAATACGGAAGAACAATTGCCATTTCCTCAGCTGTTAGCTAACGTA
GGTAATGAGGCTACACCAGTTGATATTCTAGCAAACAGGACCAATATACCTGTGCAAGAAGTCATGATGCAGCTCTTGGA
GCTTGAGCTTTCAGGGCATGTTGTTGCAGTTAACGGTGGCTATATTCGAAGGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(315-360)

DNA recombination-mediator protein A (DNA_processg_A)

(76-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

69.697

98.91

0.689
  dprA Vibrio cholerae strain A1552

58.491

100

0.591
  dprA Glaesserella parasuis strain SC1401

45.013

100

0.455
  dprA Legionella pneumophila strain ERS1305867

44.321

98.365

0.436
  dprA Haemophilus influenzae Rd KW20

41.444

100

0.422
  dprA Neisseria meningitidis MC58

37.783

100

0.409
  dprA Neisseria meningitidis strain C311

37.783

100

0.409
  dprA Neisseria gonorrhoeae strain FA1090

37.215

100

0.401
  dprA Neisseria gonorrhoeae MS11

36.962

100

0.398
  dprA Acinetobacter baylyi ADP1

38.235

100

0.39
  dprA Acinetobacter baumannii D1279779

41.39

90.191

0.373
  dprA Acinetobacter baumannii strain A118

40.785

90.191

0.368

Multiple sequence alignment