Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AL543_RS10515 Genome accession   NZ_CP014043
Coordinates   773586..774701 (+) Length   371 a.a.
NCBI ID   WP_061051863.1    Uniprot ID   -
Organism   Vibrio mimicus strain FDAARGOS_112     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 768586..779701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL543_RS10495 (AL543_09740) rsmB 769505..770785 (-) 1281 WP_061051860.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  AL543_RS10500 (AL543_09745) fmt 770842..771789 (-) 948 WP_061051861.1 methionyl-tRNA formyltransferase -
  AL543_RS10505 (AL543_09750) def 771810..772319 (-) 510 WP_000115006.1 peptide deformylase -
  AL543_RS10510 (AL543_09755) - 772459..773586 (+) 1128 WP_061051862.1 LysM peptidoglycan-binding domain-containing protein -
  AL543_RS10515 (AL543_09760) dprA 773586..774701 (+) 1116 WP_061051863.1 DNA-processing protein DprA Machinery gene
  AL543_RS10520 (AL543_09765) - 774704..775180 (+) 477 WP_000979766.1 DUF494 family protein -
  AL543_RS10525 (AL543_09770) - 775196..775762 (+) 567 WP_061051864.1 type I DNA topoisomerase -
  AL543_RS10530 (AL543_09775) - 775836..776969 (-) 1134 WP_061051865.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  AL543_RS10535 (AL543_09780) purE 776973..777458 (-) 486 WP_061051866.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  AL543_RS10540 (AL543_09785) - 777628..778185 (+) 558 WP_061051867.1 L-threonylcarbamoyladenylate synthase -
  AL543_RS10545 (AL543_09790) hemF 778204..779121 (+) 918 WP_061051868.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 40373.46 Da        Isoelectric Point: 7.2352

>NTDB_id=167879 AL543_RS10515 WP_061051863.1 773586..774701(+) (dprA) [Vibrio mimicus strain FDAARGOS_112]
MKDQDLATWLALCFTPKLGSRTISHLLSTQTPTQLQSFTPKQWLALGLKPEQLVYLTTQATKQAEQCLQWRDGAKNRYIV
TPHCPLYPRLLKEISVPPPVLFIEGLWEVLHDPAVAIVGSRNATIDGRQIARQFAGELVQSGLVVMSGLALGIDGHAHDG
ALQAQGQTVAVLGSGLTQIYPKQHQGLAERIITQGALVSEFAPYVPPKADHFPRRNRIISGLSLGVVVVEAAEKSGSLIT
ARYAAEQGREVFVVPGSIYNASSQGSNQLIRQGACLVQSVQQIHQELKNALTWSLSERVPYQATLFSAPQSDEELPFPEL
LANVGVEATPIDILASRTHIPVQDVMMQLLELELLGHVVAVPGGYIRKGRG

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=167879 AL543_RS10515 WP_061051863.1 773586..774701(+) (dprA) [Vibrio mimicus strain FDAARGOS_112]
ATGAAGGATCAGGATTTAGCCACATGGCTAGCGCTTTGCTTCACCCCTAAGCTGGGTAGCAGGACAATTTCCCATCTTCT
TTCCACCCAAACGCCAACGCAACTGCAAAGCTTTACGCCCAAGCAGTGGTTGGCGCTAGGGCTCAAACCAGAACAATTGG
TGTATTTAACCACCCAAGCCACCAAGCAAGCTGAACAGTGTTTGCAATGGCGAGATGGTGCGAAAAACCGATACATAGTG
ACGCCCCACTGCCCGCTTTATCCCCGTTTATTAAAAGAAATTTCAGTACCCCCTCCAGTGTTGTTTATTGAAGGACTATG
GGAGGTTTTACATGATCCCGCAGTTGCGATTGTCGGTAGCCGCAATGCCACGATTGATGGTCGACAAATTGCGCGTCAGT
TTGCTGGCGAGCTAGTTCAATCTGGATTAGTGGTGATGAGTGGGCTTGCTCTCGGTATTGATGGACATGCCCATGATGGA
GCTTTGCAAGCACAAGGGCAGACTGTGGCAGTTTTAGGTTCTGGTTTGACTCAAATCTACCCCAAACAGCATCAAGGACT
CGCTGAGCGGATTATTACACAAGGCGCTTTAGTCTCGGAATTTGCACCTTATGTGCCTCCCAAAGCTGATCACTTTCCGC
GGCGCAACCGTATTATTAGTGGGTTATCGCTTGGCGTGGTCGTGGTTGAAGCTGCGGAGAAAAGTGGCTCTCTCATCACA
GCGCGTTATGCGGCAGAGCAGGGGCGTGAGGTCTTTGTGGTTCCCGGTTCTATTTACAATGCTTCCAGTCAGGGTAGTAA
TCAGTTGATTCGTCAGGGGGCTTGTTTAGTTCAGAGCGTGCAACAAATTCATCAAGAGCTCAAAAATGCACTCACTTGGT
CACTCTCTGAACGGGTACCTTACCAAGCGACACTTTTTTCTGCTCCGCAGAGCGATGAAGAATTGCCATTTCCCGAGCTG
TTAGCTAACGTAGGAGTAGAGGCTACACCTATTGATATTCTCGCAAGCCGGACCCATATACCGGTTCAAGATGTCATGAT
GCAGCTCTTGGAGCTTGAACTCCTAGGGCATGTGGTTGCAGTACCTGGTGGCTATATTAGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(78-278)

DprA winged helix domain (DprA_WH)

(309-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

90.296

100

0.903
  dprA Vibrio campbellii strain DS40M4

58.919

99.73

0.588
  dprA Glaesserella parasuis strain SC1401

44.149

100

0.447
  dprA Legionella pneumophila strain ERS1305867

42.091

100

0.423
  dprA Haemophilus influenzae Rd KW20

45.075

90.296

0.407
  dprA Neisseria meningitidis strain C311

37.25

100

0.402
  dprA Neisseria meningitidis MC58

37.25

100

0.402
  dprA Neisseria gonorrhoeae strain FA1090

36.432

100

0.391
  dprA Neisseria gonorrhoeae MS11

36.181

100

0.388
  dprA Acinetobacter baylyi ADP1

38.919

99.73

0.388
  dprA Acinetobacter baumannii D1279779

42.9

89.218

0.383
  dprA Acinetobacter baumannii strain A118

42.598

89.218

0.38

Multiple sequence alignment