Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   PSA83_RS12085 Genome accession   NZ_CP017293
Coordinates   2503970..2504467 (-) Length   165 a.a.
NCBI ID   WP_033942928.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PA83     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2498970..2509467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSA83_RS34780 - 2502593..2503030 (-) 438 WP_033942934.1 LPD1 domain-containing protein -
  PSA83_RS12075 (PSA83_02386) - 2503200..2503445 (+) 246 WP_033942931.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  PSA83_RS12080 - 2503435..2503716 (+) 282 WP_071557699.1 type II toxin-antitoxin system RelE family toxin -
  PSA83_RS12085 (PSA83_02387) radC 2503970..2504467 (-) 498 WP_033942928.1 RadC family protein Machinery gene
  PSA83_RS12090 (PSA83_02388) - 2504478..2505389 (-) 912 WP_033942927.1 hypothetical protein -
  PSA83_RS12095 (PSA83_02389) - 2505482..2506486 (-) 1005 WP_033942926.1 YqaJ viral recombinase family protein -
  PSA83_RS12100 (PSA83_02390) - 2506561..2507529 (-) 969 WP_033942925.1 DUF932 domain-containing protein -
  PSA83_RS12110 - 2508356..2508553 (+) 198 WP_232092115.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18268.06 Da        Isoelectric Point: 6.6969

>NTDB_id=167879 PSA83_RS12085 WP_033942928.1 2503970..2504467(-) (radC) [Pseudomonas aeruginosa strain PA83]
MRLHKLKASDTTGTYLVESPVTESDILLMAKQLASMRLRKGRALTSPKEVFSHLQALLADYEHEVFALLMLDSRHRVIAF
EELFRGTLDGASVYPREVVKLALEHNAAALILVHNHPSGDPEPSMADRNLTTKLQDALNLVGVRTLDHVVVGQEGCVSLA
ERGYL

Nucleotide


Download         Length: 498 bp        

>NTDB_id=167879 PSA83_RS12085 WP_033942928.1 2503970..2504467(-) (radC) [Pseudomonas aeruginosa strain PA83]
ATGCGTCTGCACAAGCTGAAAGCCAGTGACACGACCGGCACCTACCTGGTCGAGTCGCCGGTGACGGAAAGCGACATCTT
GCTGATGGCCAAACAACTGGCCAGTATGCGTCTACGCAAGGGACGTGCCCTGACGTCGCCTAAGGAGGTGTTCAGTCACC
TGCAGGCGCTGCTGGCTGATTATGAGCACGAGGTGTTCGCACTGCTCATGCTCGACAGCCGGCACCGGGTGATCGCATTT
GAGGAGCTGTTCAGGGGGACTCTCGATGGAGCCAGCGTGTATCCCAGGGAGGTCGTGAAGCTCGCCCTGGAGCACAACGC
CGCCGCCCTGATCCTGGTGCACAACCACCCTTCGGGTGACCCTGAACCCAGCATGGCGGATCGAAACCTCACCACGAAAC
TGCAGGACGCACTGAATCTGGTCGGAGTCAGAACGCTCGATCACGTTGTGGTAGGCCAGGAGGGTTGTGTGTCGCTGGCT
GAGCGCGGCTACCTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(45-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

50

73.939

0.37

Multiple sequence alignment