Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AL475_RS15060 Genome accession   NZ_CP014033
Coordinates   1492957..1494072 (-) Length   371 a.a.
NCBI ID   WP_104966319.1    Uniprot ID   -
Organism   Vibrio fluvialis strain FDAARGOS_100     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1487957..1499072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL475_RS15030 (AL475_07070) hemF 1488515..1489429 (-) 915 WP_055452391.1 oxygen-dependent coproporphyrinogen oxidase -
  AL475_RS15035 (AL475_07075) - 1489449..1490006 (-) 558 WP_104966317.1 L-threonylcarbamoyladenylate synthase -
  AL475_RS15040 (AL475_07080) purE 1490204..1490689 (+) 486 WP_020332562.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  AL475_RS15045 (AL475_07085) - 1490693..1491826 (+) 1134 WP_104966318.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  AL475_RS15050 (AL475_07090) - 1491860..1492447 (-) 588 WP_020332564.1 type I DNA topoisomerase -
  AL475_RS15055 (AL475_07095) - 1492478..1492954 (-) 477 WP_020332565.1 DUF494 family protein -
  AL475_RS15060 (AL475_07100) dprA 1492957..1494072 (-) 1116 WP_104966319.1 DNA-processing protein DprA Machinery gene
  AL475_RS15065 (AL475_07105) - 1494072..1495190 (-) 1119 WP_104966320.1 LysM peptidoglycan-binding domain-containing protein -
  AL475_RS15070 (AL475_07110) def 1495330..1495842 (+) 513 WP_020332568.1 peptide deformylase -
  AL475_RS15075 (AL475_07115) fmt 1495861..1496808 (+) 948 WP_104966321.1 methionyl-tRNA formyltransferase -
  AL475_RS15080 (AL475_07120) rsmB 1496859..1498139 (+) 1281 WP_104966322.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 40499.96 Da        Isoelectric Point: 6.2298

>NTDB_id=167650 AL475_RS15060 WP_104966319.1 1492957..1494072(-) (dprA) [Vibrio fluvialis strain FDAARGOS_100]
MLERDLAAWLAFSFTPQLGIRTLQRLASRYALSDLKQHLNRDGLAVGLKDNQIQYLQRQADQDVDACLRWSDQADNRHIL
TPFHAHYPSLLTEIAAAPPVLFVEGRLEALRAPQIAIVGSRNASIDSQQIAHQFATQLVEHGLVVTSGLALGIDGYAHDG
ALKAGGETIAVLGSGLECIYPARHRALAGRIVDRGALVSEFRPDAKPRPDHFPRRNRIISGLSLGVLVVEAAEKGGSLIT
ARYAAEQSREVFVVPGSIRNPNSLGSNQLIRQGACLVQHVDHILEEVSSLMDWSRNQSQPEQTELFSGTYNEEELPFPEL
LANVGGEATPVDILANRTNIPVQDVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=167650 AL475_RS15060 WP_104966319.1 1492957..1494072(-) (dprA) [Vibrio fluvialis strain FDAARGOS_100]
ATGCTCGAACGCGATCTGGCTGCTTGGCTGGCTTTCAGTTTTACTCCTCAACTCGGTATCCGAACACTGCAGCGTTTAGC
TAGTCGTTACGCGCTGTCTGACCTCAAACAACACCTGAATCGTGACGGCTTGGCCGTAGGGCTGAAAGACAACCAGATTC
AGTATTTGCAGCGGCAGGCCGATCAAGACGTCGATGCCTGCCTGCGTTGGAGTGATCAGGCTGATAATCGCCATATTCTG
ACGCCGTTTCATGCGCACTATCCCTCGTTATTGACCGAAATCGCCGCCGCTCCGCCAGTGCTGTTTGTGGAGGGGCGGCT
TGAAGCGCTGCGTGCGCCGCAAATTGCTATTGTCGGCAGTCGCAACGCCAGTATCGACAGTCAGCAAATCGCTCATCAAT
TTGCCACGCAATTGGTCGAACACGGTTTGGTGGTCACCAGTGGTCTGGCGCTTGGTATTGATGGCTACGCGCATGATGGC
GCACTCAAAGCGGGTGGGGAAACTATTGCGGTGCTGGGCTCGGGTCTGGAATGTATTTATCCGGCTCGCCATCGCGCGTT
GGCGGGGCGTATTGTTGACAGAGGCGCCTTGGTGTCGGAATTTCGCCCTGATGCCAAGCCTCGACCTGATCATTTTCCGC
GTCGTAATCGTATTATCAGTGGGTTGTCATTGGGCGTTCTGGTGGTGGAAGCGGCGGAAAAAGGTGGCTCACTCATCACC
GCGCGTTATGCCGCCGAACAGAGCCGAGAGGTGTTTGTCGTGCCGGGCTCAATTCGCAACCCGAATAGCCTCGGCAGTAA
CCAGTTGATTCGACAAGGGGCGTGTTTGGTACAACATGTCGATCATATTCTCGAAGAAGTCAGCAGTTTGATGGACTGGA
GCCGAAATCAGTCACAACCTGAGCAGACAGAACTTTTTTCTGGCACATATAACGAAGAAGAATTGCCATTTCCCGAGCTG
TTAGCTAACGTAGGGGGAGAGGCTACACCAGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAGGATGTCATGAT
GCAGCTCCTGGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGTAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(76-278)

DprA winged helix domain (DprA_WH)

(319-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

64.42

100

0.644
  dprA Vibrio campbellii strain DS40M4

64.578

98.922

0.639
  dprA Glaesserella parasuis strain SC1401

45.43

100

0.456
  dprA Legionella pneumophila strain ERS1305867

43.132

98.113

0.423
  dprA Neisseria meningitidis MC58

37.186

100

0.399
  dprA Neisseria meningitidis strain C311

37.186

100

0.399
  dprA Haemophilus influenzae Rd KW20

43.713

90.027

0.394
  dprA Acinetobacter baumannii strain A118

41.935

91.914

0.385
  dprA Acinetobacter baumannii D1279779

41.888

91.375

0.383
  dprA Neisseria gonorrhoeae MS11

35.678

100

0.383
  dprA Acinetobacter baylyi ADP1

41.617

90.027

0.375
  dprA Neisseria gonorrhoeae strain FA1090

35.19

100

0.375

Multiple sequence alignment