Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BEN15_RS00370 Genome accession   NZ_CP016877
Coordinates   75269..75955 (-) Length   228 a.a.
NCBI ID   WP_011226324.1    Uniprot ID   Q5M3F9
Organism   Streptococcus thermophilus strain KLDS 3.1003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 70269..80955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN15_RS00340 (BEN15_00345) - 70351..70926 (+) 576 WP_002951444.1 CYTH domain-containing protein -
  BEN15_RS00345 (BEN15_00350) - 71289..72260 (+) 972 WP_011681428.1 ribose-phosphate diphosphokinase -
  BEN15_RS00350 (BEN15_00355) - 72264..73376 (+) 1113 WP_065972450.1 cysteine desulfurase family protein -
  BEN15_RS00355 (BEN15_00360) - 73378..73725 (+) 348 WP_002948028.1 DUF1831 domain-containing protein -
  BEN15_RS00360 (BEN15_00365) - 73869..74528 (+) 660 WP_065972451.1 redox-sensing transcriptional repressor Rex -
  BEN15_RS00365 (BEN15_00370) - 74521..75216 (+) 696 WP_002951449.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  BEN15_RS00370 (BEN15_00375) radC 75269..75955 (-) 687 WP_011226324.1 RadC family protein Machinery gene
  BEN15_RS00375 (BEN15_00380) - 76001..77644 (-) 1644 WP_065972452.1 rhamnan synthesis F family protein -
  BEN15_RS00380 (BEN15_00385) - 77645..78847 (-) 1203 WP_065972453.1 ABC transporter ATP-binding protein -
  BEN15_RS00385 (BEN15_00390) - 78847..79653 (-) 807 WP_065972454.1 ABC transporter permease -
  BEN15_RS00390 (BEN15_00395) - 79654..80592 (-) 939 WP_065972455.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25845.89 Da        Isoelectric Point: 6.6449

>NTDB_id=164993 BEN15_RS00370 WP_011226324.1 75269..75955(-) (radC) [Streptococcus thermophilus strain KLDS 3.1003]
MYSIVAEESGLLPRERLLQKGAEVLSDQELLAIVLRTGTRSESVLSMANRILKGMTSLADLSRLSLNELQEIPGIGRVKS
IELKAMVELAKRIEKAELARSEQIMSSQQVARRMMLDIGDKPQEHLVAIYLDTQNRIIQQKTVFIGGVRRSIAEPREILY
YACHLMATSLIVVHNHPSGEAYPSRNDIDFTQKIKRSCDDLGICLLDHLIVGKSTYYSFREEREDFEL

Nucleotide


Download         Length: 687 bp        

>NTDB_id=164993 BEN15_RS00370 WP_011226324.1 75269..75955(-) (radC) [Streptococcus thermophilus strain KLDS 3.1003]
ATGTATAGTATTGTAGCTGAGGAGTCGGGGCTTTTGCCTCGTGAGCGTCTCTTACAGAAGGGAGCAGAGGTCTTGTCTGA
CCAGGAACTGTTGGCGATAGTGCTGCGAACGGGGACTAGGTCTGAGTCGGTCCTATCCATGGCCAACCGTATTTTAAAAG
GAATGACGAGTTTGGCGGATTTGTCTCGCTTGTCTCTGAATGAGCTTCAGGAGATTCCTGGTATTGGGCGTGTGAAATCC
ATTGAGCTGAAGGCTATGGTGGAGTTGGCTAAGCGGATTGAGAAGGCTGAGTTGGCTCGTTCTGAGCAGATTATGTCTAG
TCAGCAGGTGGCACGTCGCATGATGTTAGATATTGGTGACAAGCCTCAGGAGCATCTGGTGGCCATCTACCTTGATACGC
AGAATCGTATTATTCAGCAAAAGACGGTCTTTATTGGTGGGGTTCGCCGTTCGATTGCCGAGCCGCGTGAGATTTTGTAT
TATGCTTGTCATCTGATGGCAACTTCCTTGATTGTGGTCCACAATCATCCTTCGGGGGAAGCCTATCCTAGTCGCAATGA
TATTGATTTTACTCAAAAGATTAAGAGGTCCTGTGACGACTTGGGAATTTGTCTTCTTGACCATCTGATTGTTGGAAAAT
CAACTTATTATTCCTTTCGTGAGGAGAGGGAGGATTTTGAACTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(105-222)

UPF0758 N-terminal (UPF0758_N)

(13-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M3F9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

58.929

98.246

0.579
  radC Streptococcus pneumoniae R6

58.482

98.246

0.575
  radC Streptococcus pneumoniae D39

58.482

98.246

0.575
  radC Streptococcus gordonii str. Challis substr. CH1

57.207

97.368

0.557
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

47.642

92.982

0.443

Multiple sequence alignment