Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   ATM98_RS08035 Genome accession   NZ_CP013651
Coordinates   1649814..1650209 (+) Length   131 a.a.
NCBI ID   WP_061564657.1    Uniprot ID   A0A127TUN4
Organism   Streptococcus sp. A12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1644814..1655209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATM98_RS09690 - 1645210..1645365 (+) 156 WP_185759944.1 hypothetical protein -
  ATM98_RS08010 (ATM98_08010) - 1645475..1646959 (-) 1485 WP_006595123.1 DUF1846 domain-containing protein -
  ATM98_RS08015 (ATM98_08015) pepA 1647119..1648183 (-) 1065 WP_061564653.1 glutamyl aminopeptidase -
  ATM98_RS08020 (ATM98_08020) - 1648330..1648620 (+) 291 WP_061564654.1 DUF4651 domain-containing protein -
  ATM98_RS08025 (ATM98_08025) - 1648617..1648934 (+) 318 WP_061564655.1 thioredoxin family protein -
  ATM98_RS08030 (ATM98_08030) - 1648949..1649575 (+) 627 WP_061564656.1 DUF4479 and tRNA-binding domain-containing protein -
  ATM98_RS08035 (ATM98_08035) ssbB/cilA 1649814..1650209 (+) 396 WP_061564657.1 single-stranded DNA-binding protein Machinery gene
  ATM98_RS08040 (ATM98_08040) - 1650431..1651417 (+) 987 WP_061564658.1 substrate-binding domain-containing protein -
  ATM98_RS08045 (ATM98_08045) - 1651417..1652736 (+) 1320 WP_061564659.1 sensor histidine kinase -
  ATM98_RS08050 (ATM98_08050) - 1652733..1653419 (+) 687 WP_061564660.1 response regulator transcription factor -
  ATM98_RS08055 (ATM98_08055) - 1653416..1654723 (+) 1308 WP_061564661.1 extracellular solute-binding protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14647.63 Da        Isoelectric Point: 5.9328

>NTDB_id=163429 ATM98_RS08035 WP_061564657.1 1649814..1650209(+) (ssbB/cilA) [Streptococcus sp. A12]
MYNKVILIGRLVADPELHKTSTDKSVARATLAVNRRYKDQNGEREADFITLVVWGKLAETLVSYANKGSLLSVDGELRTR
RYEKNGATQYVTEVLCQGFQLLESRAQRAMRANGAGGDLADLILEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=163429 ATM98_RS08035 WP_061564657.1 1649814..1650209(+) (ssbB/cilA) [Streptococcus sp. A12]
ATGTACAATAAAGTAATTTTAATCGGGCGCCTTGTGGCTGACCCCGAGCTTCATAAGACCAGTACGGACAAGTCCGTTGC
GCGTGCGACCCTGGCTGTCAATCGGCGTTACAAGGATCAAAATGGCGAACGGGAGGCGGACTTTATCACCCTAGTGGTCT
GGGGGAAATTGGCAGAGACCCTTGTCTCCTACGCCAACAAAGGGAGCTTGCTCTCTGTGGATGGGGAGCTTCGAACCAGA
CGCTATGAGAAGAACGGGGCGACCCAATATGTGACAGAGGTACTCTGTCAAGGCTTCCAGCTCTTAGAAAGTCGTGCTCA
ACGAGCGATGCGGGCCAATGGAGCAGGAGGAGATCTAGCGGATCTCATCCTGGAAGAGGAAGAGCTTCCCTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A127TUN4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae TIGR4

81.679

100

0.817
  ssbB/cilA Streptococcus pneumoniae Rx1

80.916

100

0.809
  ssbB/cilA Streptococcus pneumoniae D39

80.916

100

0.809
  ssbB/cilA Streptococcus pneumoniae R6

80.916

100

0.809
  ssbB/cilA Streptococcus mitis NCTC 12261

80.916

100

0.809
  ssbB/cilA Streptococcus mitis SK321

80.916

100

0.809
  ssbA Streptococcus mutans UA159

71.756

100

0.718
  ssbB Streptococcus sobrinus strain NIDR 6715-7

70.992

100

0.71
  ssbB Lactococcus lactis subsp. cremoris KW2

60.909

83.969

0.511
  ssb Latilactobacillus sakei subsp. sakei 23K

48.214

85.496

0.412
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

80.916

0.405
  ssbB Bacillus subtilis subsp. subtilis str. 168

44.444

82.443

0.366

Multiple sequence alignment