Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ASZ88_RS03060 Genome accession   NZ_CP013311
Coordinates   604630..605148 (+) Length   172 a.a.
NCBI ID   WP_001130227.1    Uniprot ID   -
Organism   Vibrio cholerae strain E1320     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 599630..610148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASZ88_RS03050 (ASZ88_00579) - 600040..602895 (+) 2856 WP_001233047.1 M16 family metallopeptidase -
  ASZ88_RS03055 (ASZ88_00580) gshA 603007..604581 (+) 1575 WP_000032608.1 glutamate--cysteine ligase -
  ASZ88_RS03060 (ASZ88_00581) luxS 604630..605148 (+) 519 WP_001130227.1 S-ribosylhomocysteine lyase Regulator
  ASZ88_RS03065 (ASZ88_00582) - 605218..606498 (-) 1281 WP_000340990.1 HlyC/CorC family transporter -
  ASZ88_RS03070 (ASZ88_00583) - 606581..607375 (-) 795 WP_000369278.1 cytochrome C assembly family protein -
  ASZ88_RS03075 (ASZ88_00584) ffh 607588..608973 (+) 1386 WP_000462721.1 signal recognition particle protein -
  ASZ88_RS03080 (ASZ88_00585) rpsP 609209..609457 (+) 249 WP_000256449.1 30S ribosomal protein S16 -
  ASZ88_RS03085 (ASZ88_00586) rimM 609485..610039 (+) 555 WP_000061906.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19080.90 Da        Isoelectric Point: 5.2199

>NTDB_id=161860 ASZ88_RS03060 WP_001130227.1 604630..605148(+) (luxS) [Vibrio cholerae strain E1320]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSERGIHTLEHLYAGFMRNHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQEQIPELNEYQCGTAAMHSLEEAKAIAKNVIAAGISVNRNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=161860 ASZ88_RS03060 WP_001130227.1 604630..605148(+) (luxS) [Vibrio cholerae strain E1320]
ATGCCATTATTAGACAGTTTTACCGTCGATCATACTCGTATGAATGCACCGGCGGTGCGTGTTGCCAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGTTTTACTATGCCAAACAAAGATATCTTGTCTGAGCGCGGTATCC
ATACTCTAGAGCATCTCTACGCGGGCTTTATGCGCAATCACCTTAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACAGGTTTCTACATGAGCTTGATTGGTGCGCCGACAGAACAGCAAGTGGCACAAGCATGGCTAGCCGC
AATGCAAGATGTGTTGAAAGTTGAAAGCCAAGAGCAAATTCCTGAGCTGAATGAGTACCAGTGCGGCACTGCGGCGATGC
ACTCGCTCGAAGAAGCCAAAGCGATTGCGAAAAACGTGATTGCGGCAGGCATCTCGGTTAACCGTAACGATGAGTTGGCG
CTGCCCGAATCTATGCTCAATGAGCTGAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

100

100

1

Multiple sequence alignment