Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ATN06_RS10845 Genome accession   NZ_CP013274
Coordinates   2055754..2056089 (+) Length   111 a.a.
NCBI ID   WP_060630634.1    Uniprot ID   A0A243GNP3
Organism   Bacillus thuringiensis strain CTC     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2050754..2061089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATN06_RS10820 (ATN06_10590) - 2050980..2051777 (-) 798 WP_060630631.1 hypothetical protein -
  ATN06_RS10825 (ATN06_10595) - 2051887..2052534 (+) 648 WP_060630632.1 HD domain-containing protein -
  ATN06_RS10830 (ATN06_10600) - 2052531..2054426 (+) 1896 WP_060630633.1 ABC-F family ATP-binding cassette domain-containing protein -
  ATN06_RS10835 (ATN06_10605) - 2054502..2055233 (+) 732 WP_001260655.1 Bax inhibitor-1/YccA family membrane protein -
  ATN06_RS10840 (ATN06_10610) - 2055338..2055592 (+) 255 WP_000975140.1 DUF4318 domain-containing protein -
  ATN06_RS10845 (ATN06_10615) ssbA 2055754..2056089 (+) 336 WP_060630634.1 single-stranded DNA-binding protein Machinery gene
  ATN06_RS10850 (ATN06_10620) - 2056257..2057384 (+) 1128 WP_060630635.1 conserved virulence factor C family protein -
  ATN06_RS10855 (ATN06_10625) - 2057388..2057771 (+) 384 WP_060630636.1 thiol-disulfide oxidoreductase DCC family protein -
  ATN06_RS10860 (ATN06_10630) - 2057855..2058289 (+) 435 WP_000063706.1 BrxA/BrxB family bacilliredoxin -
  ATN06_RS10865 (ATN06_10635) - 2058339..2059115 (+) 777 WP_060630637.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12771.66 Da        Isoelectric Point: 9.6865

>NTDB_id=161281 ATN06_RS10845 WP_060630634.1 2055754..2056089(+) (ssbA) [Bacillus thuringiensis strain CTC]
MMNRVVLIGRLTKEPELYYTKQGVAYARICVAVNRGFRNSLGEQQVDFINCVVWRKSAENVTEYCKKGSLVGITGRIQTS
NYDDEKGKRIYRTEVVIESITFLERRREGAS

Nucleotide


Download         Length: 336 bp        

>NTDB_id=161281 ATN06_RS10845 WP_060630634.1 2055754..2056089(+) (ssbA) [Bacillus thuringiensis strain CTC]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAACAAGGCGTTGCTTATGC
ACGAATATGTGTTGCTGTGAATAGAGGATTTCGAAATAGTTTAGGTGAACAACAAGTCGATTTTATTAATTGTGTCGTTT
GGCGAAAATCGGCTGAGAATGTAACTGAATATTGTAAGAAGGGATCACTTGTTGGGATTACAGGGCGTATTCAGACTAGT
AATTACGATGATGAAAAAGGTAAGAGAATATATAGAACTGAAGTTGTGATTGAGAGTATTACCTTTTTGGAGAGAAGGCG
GGAGGGGGCATCGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A243GNP3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

95.495

0.55
  ssb Latilactobacillus sakei subsp. sakei 23K

54.717

95.495

0.523
  ssbB Bacillus subtilis subsp. subtilis str. 168

50.893

100

0.514
  ssbB Lactococcus lactis subsp. cremoris KW2

45.714

94.595

0.432
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.636

99.099

0.432
  ssbA Streptococcus mutans UA159

40

99.099

0.396
  ssbB/cilA Streptococcus mitis NCTC 12261

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae TIGR4

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae D39

39.091

99.099

0.387
  ssbB/cilA Streptococcus pneumoniae R6

39.091

99.099

0.387
  ssbB/cilA Streptococcus mitis SK321

39.091

99.099

0.387
  ssbB/cilA Streptococcus pneumoniae Rx1

39.091

99.099

0.387

Multiple sequence alignment