Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NPD5_RS05015 Genome accession   NZ_CP013243
Coordinates   1103736..1104689 (-) Length   317 a.a.
NCBI ID   WP_072584871.1    Uniprot ID   -
Organism   Clostridium sporogenes strain CDC_1632     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1098736..1109689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPD5_RS04990 (NPD5_996) - 1099826..1100827 (-) 1002 WP_080490397.1 helix-turn-helix domain-containing protein -
  NPD5_RS05000 (NPD5_997) - 1101030..1101974 (-) 945 WP_072584868.1 siderophore ABC transporter substrate-binding protein -
  NPD5_RS05005 (NPD5_998) - 1102044..1102799 (-) 756 WP_072584869.1 ABC transporter ATP-binding protein -
  NPD5_RS05010 (NPD5_999) - 1102796..1103746 (-) 951 WP_072584870.1 iron chelate uptake ABC transporter family permease subunit -
  NPD5_RS05015 (NPD5_1000) ceuB 1103736..1104689 (-) 954 WP_072584871.1 ABC transporter permease Machinery gene
  NPD5_RS05020 (NPD5_1001) - 1104935..1105693 (+) 759 WP_072584872.1 helix-turn-helix domain-containing protein -
  NPD5_RS21995 (NPD5_1002) - 1105756..1105878 (-) 123 WP_335617928.1 hypothetical protein -
  NPD5_RS22380 (NPD5_1003) - 1105878..1106051 (-) 174 WP_080490398.1 ATP-binding cassette domain-containing protein -
  NPD5_RS05030 (NPD5_1004) - 1106095..1107501 (-) 1407 WP_072584873.1 sensor histidine kinase -
  NPD5_RS05035 (NPD5_1005) - 1107501..1108202 (-) 702 WP_072584874.1 response regulator transcription factor -
  NPD5_RS05040 (NPD5_1006) - 1108470..1108706 (-) 237 WP_072584875.1 SHOCT domain-containing protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34844.14 Da        Isoelectric Point: 10.0654

>NTDB_id=161067 NPD5_RS05015 WP_072584871.1 1103736..1104689(-) (ceuB) [Clostridium sporogenes strain CDC_1632]
MKKRYLILTLIILSICSIFIGVKDISFVDIFNSDDVKLKVLLISRIPRLISIIVVGGSMSIAGLIMQQISRNKFVSPDTA
STVDSAKLGILVALMIFPSATLTEKMIVSFIFSLLGTFLFMKILKKIKVKNSIFIPLVGIMLGNIIDSITTFFAYKYNLI
QSIASWLQGDFSLIIKGNYELIYLSLPIVVIAFIYANKFTVAGMGEDFSKNLGVNYNKIINIGLVIVALISSLVVITVGK
IPFLGLIVPNIVTLYKGDNLKNSLYSTALLGAVFLLGCDILGRLIIYPYEISIGLVVGVIGSTVFLYLLFRRNGNEV

Nucleotide


Download         Length: 954 bp        

>NTDB_id=161067 NPD5_RS05015 WP_072584871.1 1103736..1104689(-) (ceuB) [Clostridium sporogenes strain CDC_1632]
ATGAAAAAGAGATATTTAATTTTGACATTAATTATTTTATCTATTTGTTCAATATTTATTGGAGTAAAAGATATTAGCTT
TGTAGATATATTTAATTCAGATGATGTAAAGCTTAAGGTATTATTAATCAGTAGAATTCCAAGACTTATAAGTATTATTG
TAGTAGGAGGGAGTATGAGTATAGCAGGACTTATTATGCAACAAATAAGTCGGAATAAATTTGTATCACCAGATACAGCT
TCAACTGTAGATAGTGCAAAACTTGGGATTTTAGTTGCTTTAATGATATTTCCTTCCGCAACTCTCACTGAAAAAATGAT
AGTTTCTTTTATATTTTCTTTATTAGGCACATTCTTATTTATGAAAATTTTAAAGAAAATAAAAGTTAAAAATTCTATAT
TTATACCACTTGTAGGTATAATGCTTGGGAATATAATAGATTCAATAACTACGTTTTTTGCATATAAATATAATCTTATT
CAAAGTATTGCATCTTGGCTTCAAGGAGATTTTTCTTTAATTATTAAAGGAAATTATGAGCTTATATATCTGAGTCTACC
TATTGTAGTCATAGCTTTTATTTATGCTAATAAATTTACAGTAGCAGGTATGGGAGAGGATTTCTCTAAGAATTTAGGGG
TTAATTATAACAAAATCATAAATATAGGACTTGTAATAGTAGCATTAATATCTTCACTGGTAGTTATTACTGTGGGAAAA
ATACCATTTTTAGGTCTTATAGTACCTAATATAGTTACTCTTTATAAAGGAGATAATTTAAAAAATAGTCTTTATAGTAC
AGCATTGCTTGGAGCAGTATTTCTCTTAGGCTGTGACATACTAGGTAGGTTAATTATTTATCCTTATGAAATATCTATAG
GACTTGTAGTTGGGGTTATAGGAAGTACAGTATTCCTTTATCTCTTGTTTAGGAGGAATGGCAATGAAGTGTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.125

98.107

0.502

Multiple sequence alignment