Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AOT11_RS07080 Genome accession   NZ_CP012881
Coordinates   1533081..1534184 (+) Length   367 a.a.
NCBI ID   WP_017419871.1    Uniprot ID   -
Organism   Vibrio vulnificus NBRC 15645 = ATCC 27562     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1528081..1539184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOT11_RS07060 (AOT11_14110) rsmB 1528990..1530270 (-) 1281 WP_017419867.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  AOT11_RS07065 (AOT11_14115) fmt 1530354..1531301 (-) 948 WP_017419868.1 methionyl-tRNA formyltransferase -
  AOT11_RS07070 (AOT11_14120) def 1531333..1531845 (-) 513 WP_038964320.1 peptide deformylase -
  AOT11_RS07075 (AOT11_14125) - 1531984..1533081 (+) 1098 WP_017419870.1 LysM peptidoglycan-binding domain-containing protein -
  AOT11_RS07080 (AOT11_14130) dprA 1533081..1534184 (+) 1104 WP_017419871.1 DNA-processing protein DprA Machinery gene
  AOT11_RS07085 (AOT11_14135) - 1534187..1534666 (+) 480 WP_026050366.1 DUF494 family protein -
  AOT11_RS07090 (AOT11_14140) - 1534690..1535259 (+) 570 WP_026050365.1 type I DNA topoisomerase -
  AOT11_RS07095 (AOT11_14145) - 1535298..1536635 (-) 1338 WP_011149570.1 IS4-like element ISVvu3 family transposase -
  AOT11_RS07100 (AOT11_14150) - 1536766..1537869 (-) 1104 WP_089529794.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  AOT11_RS07105 (AOT11_14155) purE 1537873..1538358 (-) 486 WP_017420266.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  AOT11_RS07110 (AOT11_14160) - 1538539..1539096 (+) 558 WP_026050282.1 L-threonylcarbamoyladenylate synthase -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 39435.92 Da        Isoelectric Point: 6.7779

>NTDB_id=158024 AOT11_RS07080 WP_017419871.1 1533081..1534184(+) (dprA) [Vibrio vulnificus NBRC 15645 = ATCC 27562]
MSQDELHAWLALSFTPNIGVKKLTKLLSIDSPLNILRYSHEQLLSLGLSSQQIITLRSSAQQDAEAALQWQQLSSQHHII
TLHDGLYPPLLKETASPPCQLFVQGDPHCLTKPQVALVGSRHATMEGLQHARDFAAQLVQHGLVVTSGLALGIDGHAHDG
ALTAGGETVAVLGSGFQYIYPARHKGLAARICQQGALVSEFRPSTKAKAEHFPRRNRIISGLSLGVLVVEAAEKSGSLIT
ARYAAEQGREVFALPSSLHITNARGGNALIKSGACLVTGVEDVLSEVQTLLDWSTNQQADLFSSSNTEEQLPFPQLLANV
GSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVNGGYIRRGRG

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=158024 AOT11_RS07080 WP_017419871.1 1533081..1534184(+) (dprA) [Vibrio vulnificus NBRC 15645 = ATCC 27562]
ATGAGTCAGGATGAACTGCATGCTTGGTTAGCACTTAGTTTTACGCCCAATATTGGGGTTAAGAAGCTAACCAAGTTACT
CAGTATTGATTCTCCGCTCAATATTCTGCGTTATTCCCACGAGCAGCTACTGTCGCTGGGACTGTCGTCCCAGCAAATCA
TCACCTTGCGAAGTAGTGCTCAGCAAGACGCTGAAGCCGCTCTTCAATGGCAGCAGCTTTCCTCCCAGCATCATATTATT
ACCCTTCATGATGGCCTATATCCGCCGCTACTTAAGGAAACGGCTTCACCGCCTTGCCAACTGTTTGTACAAGGTGATCC
TCATTGTTTAACCAAGCCACAAGTTGCGCTGGTGGGGAGTCGTCATGCGACCATGGAAGGGTTGCAGCATGCCCGCGATT
TTGCGGCTCAATTGGTACAGCATGGGTTGGTGGTGACCAGTGGTTTGGCGCTTGGGATTGATGGCCATGCCCATGATGGT
GCGCTGACAGCGGGCGGTGAAACCGTTGCAGTACTTGGTTCGGGCTTTCAATACATTTATCCCGCTCGCCATAAAGGTCT
TGCCGCGAGAATTTGTCAACAAGGTGCGCTGGTTTCGGAGTTCCGTCCGAGTACCAAAGCCAAAGCAGAACATTTTCCTC
GTCGAAATCGAATCATTAGTGGCTTGTCTCTGGGGGTTTTGGTGGTCGAAGCAGCAGAGAAAAGTGGCTCTTTGATTACT
GCCCGTTATGCCGCTGAGCAAGGCCGAGAAGTCTTTGCTTTGCCCAGTTCTCTTCATATTACCAACGCACGTGGTGGAAA
CGCGCTGATAAAAAGCGGAGCTTGTTTGGTCACTGGTGTTGAGGATGTACTGAGTGAAGTGCAAACCTTGCTTGACTGGT
CGACAAACCAACAAGCGGATTTATTTTCTTCCTCTAATACTGAAGAACAATTGCCATTTCCTCAGCTGTTAGCTAACGTA
GGTAGTGAGGCTACACCAGTTGATATTCTAGCAAACAGGACCAATATACCTGTGCAAGAAGTCATGATGCAGCTCTTAGA
GCTTGAGCTTTCAGGGCATGTTGTTGCAGTTAACGGTGGCTATATTCGAAGGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(315-360)

DNA recombination-mediator protein A (DNA_processg_A)

(76-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

68.871

98.91

0.681
  dprA Vibrio cholerae strain A1552

58.76

100

0.594
  dprA Glaesserella parasuis strain SC1401

44.474

100

0.45
  dprA Legionella pneumophila strain ERS1305867

44.044

98.365

0.433
  dprA Haemophilus influenzae Rd KW20

41.067

100

0.42
  dprA Neisseria meningitidis MC58

37.531

100

0.406
  dprA Neisseria meningitidis strain C311

37.531

100

0.406
  dprA Neisseria gonorrhoeae strain FA1090

36.962

100

0.398
  dprA Neisseria gonorrhoeae MS11

36.709

100

0.395
  dprA Acinetobacter baylyi ADP1

37.968

100

0.387
  dprA Acinetobacter baumannii D1279779

40.785

90.191

0.368
  dprA Acinetobacter baumannii strain A118

40.181

90.191

0.362

Multiple sequence alignment