Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   FORC24_RS10920 Genome accession   NZ_CP012691
Coordinates   2162633..2162965 (+) Length   110 a.a.
NCBI ID   WP_069358033.1    Uniprot ID   -
Organism   Bacillus cereus strain FORC_024     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2157633..2167965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC24_RS10890 (FORC24_1996) arsD 2157917..2158276 (+) 360 WP_000717836.1 arsenite efflux transporter metallochaperone ArsD -
  FORC24_RS10895 (FORC24_1997) arsA 2158295..2160055 (+) 1761 WP_048556850.1 arsenical pump-driving ATPase -
  FORC24_RS10900 (FORC24_1998) - 2160094..2160375 (+) 282 WP_048556849.1 iron-sulfur cluster biosynthesis family protein -
  FORC24_RS10905 (FORC24_1999) - 2160402..2160827 (+) 426 WP_048556848.1 tyrosine-protein phosphatase -
  FORC24_RS10910 (FORC24_2001) - 2161434..2161670 (-) 237 WP_000021281.1 helix-turn-helix transcriptional regulator -
  FORC24_RS10915 (FORC24_2002) - 2161984..2162505 (+) 522 WP_048556847.1 hypothetical protein -
  FORC24_RS10920 (FORC24_2003) ssbA 2162633..2162965 (+) 333 WP_069358033.1 single-stranded DNA-binding protein Machinery gene
  FORC24_RS10925 (FORC24_2004) - 2163214..2164341 (+) 1128 WP_069358034.1 conserved virulence factor C family protein -
  FORC24_RS10930 (FORC24_2005) - 2164345..2164728 (+) 384 WP_000634907.1 DCC1-like thiol-disulfide oxidoreductase family protein -
  FORC24_RS10935 (FORC24_2006) - 2164812..2165246 (+) 435 WP_000063706.1 BrxA/BrxB family bacilliredoxin -
  FORC24_RS10940 (FORC24_2007) - 2165296..2166072 (+) 777 WP_069358035.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 110 a.a.        Molecular weight: 12666.50 Da        Isoelectric Point: 9.4344

>NTDB_id=156484 FORC24_RS10920 WP_069358033.1 2162633..2162965(+) (ssbA) [Bacillus cereus strain FORC_024]
MNRVVLIGRLTKEPELYYTKQGVAYARICVAVNRGFRNSLGEQQVDFINCVVWRKSAENVTEYCKKGSLVGITGRIQTSN
YDDEQGKRIYRTEVVIESITFLERRREGAL

Nucleotide


Download         Length: 333 bp        

>NTDB_id=156484 FORC24_RS10920 WP_069358033.1 2162633..2162965(+) (ssbA) [Bacillus cereus strain FORC_024]
TTGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAACAAGGCGTTGCTTATGCACG
AATATGTGTTGCGGTGAATAGAGGATTTCGAAATAGTTTAGGTGAACAACAAGTCGATTTTATTAATTGTGTCGTTTGGC
GCAAATCGGCTGAGAATGTAACTGAATATTGTAAGAAGGGGTCGCTCGTTGGGATTACAGGGCGTATTCAGACTAGTAAT
TACGATGATGAACAAGGCAAGAGAATATATAGAACTGAAGTTGTGATTGAGAGTATTACCTTTTTGGAGAGAAGGCGGGA
GGGGGCATTGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.095

95.455

0.555
  ssb Latilactobacillus sakei subsp. sakei 23K

55.238

95.455

0.527
  ssbB Bacillus subtilis subsp. subtilis str. 168

50.909

100

0.509
  ssbB Lactococcus lactis subsp. cremoris KW2

45.455

100

0.455
  ssbB Streptococcus sobrinus strain NIDR 6715-7

44.037

99.091

0.436
  ssbA Streptococcus mutans UA159

39.45

99.091

0.391
  ssbB/cilA Streptococcus mitis NCTC 12261

39.45

99.091

0.391
  ssbB/cilA Streptococcus pneumoniae TIGR4

39.45

99.091

0.391
  ssbB/cilA Streptococcus pneumoniae D39

38.532

99.091

0.382
  ssbB/cilA Streptococcus pneumoniae R6

38.532

99.091

0.382
  ssbB/cilA Streptococcus mitis SK321

38.532

99.091

0.382
  ssbB/cilA Streptococcus pneumoniae Rx1

38.532

99.091

0.382

Multiple sequence alignment