Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   BSM4216_RS14870 Genome accession   NZ_CP012024
Coordinates   3180982..3181338 (-) Length   118 a.a.
NCBI ID   WP_048624218.1    Uniprot ID   -
Organism   Bacillus smithii strain DSM 4216     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3175982..3186338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSM4216_RS14855 (BSM4216_3631) - 3176134..3177750 (+) 1617 WP_048624215.1 hypothetical protein -
  BSM4216_RS14860 (BSM4216_3632) - 3177743..3180553 (+) 2811 WP_048624216.1 DEAD/DEAH box helicase -
  BSM4216_RS14865 (BSM4216_3634) - 3180761..3180985 (-) 225 WP_048624217.1 hypothetical protein -
  BSM4216_RS14870 (BSM4216_3635) ssbB 3180982..3181338 (-) 357 WP_048624218.1 single-stranded DNA-binding protein Machinery gene
  BSM4216_RS14880 (BSM4216_3637) - 3181611..3182045 (+) 435 WP_048624220.1 YwpF family protein -
  BSM4216_RS14885 (BSM4216_3638) - 3182233..3182634 (-) 402 WP_048624221.1 hypothetical protein -
  BSM4216_RS14890 (BSM4216_3640) - 3182930..3183313 (-) 384 WP_048624222.1 hypothetical protein -
  BSM4216_RS14900 (BSM4216_3643) fabZ 3183668..3184108 (-) 441 WP_003353316.1 3-hydroxyacyl-ACP dehydratase FabZ -
  BSM4216_RS14905 (BSM4216_3644) - 3184114..3184332 (-) 219 WP_003353317.1 DNA-directed RNA polymerase subunit beta -
  BSM4216_RS14910 (BSM4216_3645) - 3184343..3185167 (-) 825 WP_048624224.1 flagellar hook-basal body protein -
  BSM4216_RS14915 (BSM4216_3646) - 3185191..3186012 (-) 822 WP_048624225.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 13269.36 Da        Isoelectric Point: 9.0240

>NTDB_id=150520 BSM4216_RS14870 WP_048624218.1 3180982..3181338(-) (ssbB) [Bacillus smithii strain DSM 4216]
MINQVTLVGRLTKDPELRYTTEGKMFLPVILAVQRPYRGQEGGGKADFVLCTFWNKIAENTAKYCSKGSLIGVLGSIQTR
NYENKEGKKVHITEVVAKSVQFLSSKPQEETFPLMELE

Nucleotide


Download         Length: 357 bp        

>NTDB_id=150520 BSM4216_RS14870 WP_048624218.1 3180982..3181338(-) (ssbB) [Bacillus smithii strain DSM 4216]
TTGATCAATCAAGTGACGTTAGTCGGGAGACTGACAAAAGATCCGGAGCTGCGTTACACGACGGAAGGGAAAATGTTTCT
TCCCGTCATATTGGCGGTTCAGCGTCCTTATCGCGGCCAAGAAGGAGGGGGAAAAGCAGATTTTGTTCTGTGTACATTTT
GGAACAAGATTGCGGAAAATACGGCCAAATATTGTAGCAAAGGATCTTTGATCGGGGTGCTGGGCAGTATTCAGACAAGA
AATTATGAAAATAAAGAAGGAAAGAAGGTGCATATCACGGAAGTCGTGGCCAAATCGGTGCAGTTTTTAAGTTCAAAGCC
CCAAGAAGAAACGTTTCCATTAATGGAGCTTGAATGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

93.22

0.542
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.66

89.831

0.5
  ssb Latilactobacillus sakei subsp. sakei 23K

48.182

93.22

0.449
  ssbA Streptococcus mutans UA159

44.444

91.525

0.407
  ssbB Streptococcus sobrinus strain NIDR 6715-7

44.444

91.525

0.407
  ssbB/cilA Streptococcus pneumoniae TIGR4

43.519

91.525

0.398
  ssbB/cilA Streptococcus mitis NCTC 12261

43.519

91.525

0.398
  ssbB/cilA Streptococcus pneumoniae Rx1

42.593

91.525

0.39
  ssbB/cilA Streptococcus pneumoniae D39

42.593

91.525

0.39
  ssbB/cilA Streptococcus pneumoniae R6

42.593

91.525

0.39
  ssbB/cilA Streptococcus mitis SK321

42.593

91.525

0.39
  ssbB Lactococcus lactis subsp. cremoris KW2

42.453

89.831

0.381

Multiple sequence alignment