Detailed information
Bioinformatically predicted
Overview
| Name | pilA2 | Type | Machinery gene |
| Locus tag | ECTOBSL9_RS16335 | Genome accession | NZ_CP011994 |
| Coordinates | 559188..559604 (+) | Length | 138 a.a. |
| NCBI ID | WP_082829697.1 | Uniprot ID | A0A161HEN5 |
| Organism | Ectothiorhodospira sp. BSL-9 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 549097..579300 | 559188..559604 | within | 0 |
Gene organization within MGE regions
Location: 549097..579300
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECTOBSL9_RS02745 (ECTOBSL9_0551) | - | 549097..549480 (-) | 384 | WP_063463773.1 | type IV pilin protein | - |
| ECTOBSL9_RS02750 (ECTOBSL9_0552) | - | 549552..553115 (-) | 3564 | WP_063463774.1 | pilus assembly protein | - |
| ECTOBSL9_RS02755 (ECTOBSL9_0553) | - | 553183..553677 (-) | 495 | WP_063463775.1 | PilX N-terminal domain-containing pilus assembly protein | - |
| ECTOBSL9_RS02760 (ECTOBSL9_0554) | - | 553688..554746 (-) | 1059 | WP_082829696.1 | PilW family protein | - |
| ECTOBSL9_RS02765 (ECTOBSL9_0555) | pilV | 554774..555169 (-) | 396 | WP_063463777.1 | type IV pilus modification protein PilV | - |
| ECTOBSL9_RS02770 (ECTOBSL9_0556) | - | 555169..555651 (-) | 483 | WP_063463778.1 | GspH/FimT family pseudopilin | - |
| ECTOBSL9_RS02775 (ECTOBSL9_0557) | - | 555944..556408 (-) | 465 | WP_063463779.1 | tetratricopeptide repeat protein | - |
| ECTOBSL9_RS02780 | - | 556413..557624 (-) | 1212 | WP_063463780.1 | PilX N-terminal domain-containing pilus assembly protein | - |
| ECTOBSL9_RS02785 (ECTOBSL9_0559) | - | 557663..558226 (-) | 564 | WP_063463781.1 | PilW family protein | - |
| ECTOBSL9_RS02790 (ECTOBSL9_0560) | pilV | 558226..558717 (-) | 492 | WP_063463782.1 | type IV pilus modification protein PilV | - |
| ECTOBSL9_RS16335 (ECTOBSL9_0561) | pilA2 | 559188..559604 (+) | 417 | WP_082829697.1 | pilin | Machinery gene |
| ECTOBSL9_RS02795 (ECTOBSL9_0562) | - | 559963..560673 (-) | 711 | WP_063463783.1 | hypothetical protein | - |
| ECTOBSL9_RS02800 (ECTOBSL9_0563) | - | 560972..561925 (-) | 954 | WP_063463784.1 | transposase | - |
| ECTOBSL9_RS17375 | - | 562065..562655 (+) | 591 | WP_240481037.1 | BrnT family toxin | - |
| ECTOBSL9_RS02810 (ECTOBSL9_0565) | - | 562739..563038 (+) | 300 | WP_063463785.1 | hypothetical protein | - |
| ECTOBSL9_RS02815 (ECTOBSL9_0566) | - | 563993..564946 (-) | 954 | WP_063463786.1 | transposase | - |
| ECTOBSL9_RS02820 (ECTOBSL9_0567) | - | 565086..565367 (+) | 282 | WP_063463787.1 | BrnT family toxin | - |
| ECTOBSL9_RS02825 (ECTOBSL9_0568) | - | 565342..565677 (+) | 336 | WP_063463788.1 | DNA-binding transcriptional regulator | - |
| ECTOBSL9_RS02830 (ECTOBSL9_0569) | - | 565872..566831 (-) | 960 | WP_063463789.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| ECTOBSL9_RS17385 | - | 567608..568198 (+) | 591 | WP_240481037.1 | BrnT family toxin | - |
| ECTOBSL9_RS02845 (ECTOBSL9_0572) | - | 568282..568581 (+) | 300 | WP_063463785.1 | hypothetical protein | - |
| ECTOBSL9_RS02850 (ECTOBSL9_0573) | - | 568899..569096 (+) | 198 | WP_063463791.1 | hypothetical protein | - |
| ECTOBSL9_RS02855 (ECTOBSL9_0574) | - | 569093..569950 (+) | 858 | WP_082829698.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| ECTOBSL9_RS02860 (ECTOBSL9_0575) | - | 570245..571198 (-) | 954 | WP_063463792.1 | transposase | - |
| ECTOBSL9_RS02865 (ECTOBSL9_0576) | - | 571245..571634 (-) | 390 | WP_063463793.1 | type II toxin-antitoxin system VapC family toxin | - |
| ECTOBSL9_RS02870 (ECTOBSL9_0577) | - | 571634..571873 (-) | 240 | WP_063463794.1 | hypothetical protein | - |
| ECTOBSL9_RS17790 (ECTOBSL9_0578) | - | 572006..572287 (-) | 282 | WP_063463795.1 | hypothetical protein | - |
| ECTOBSL9_RS02880 (ECTOBSL9_0579) | - | 572979..573236 (+) | 258 | WP_063463796.1 | type II toxin-antitoxin system HicA family toxin | - |
| ECTOBSL9_RS02885 (ECTOBSL9_0580) | - | 573233..573586 (+) | 354 | WP_063463797.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| ECTOBSL9_RS02890 (ECTOBSL9_0581) | - | 573707..574330 (+) | 624 | WP_063465969.1 | IS607 family transposase | - |
| ECTOBSL9_RS02895 (ECTOBSL9_0582) | - | 574327..575520 (+) | 1194 | WP_063463798.1 | RNA-guided endonuclease TnpB family protein | - |
| ECTOBSL9_RS02900 (ECTOBSL9_0583) | - | 575980..576279 (+) | 300 | WP_063463799.1 | BrnT family toxin | - |
| ECTOBSL9_RS02905 (ECTOBSL9_0584) | - | 576245..576580 (+) | 336 | WP_082829699.1 | BrnA antitoxin family protein | - |
| ECTOBSL9_RS02910 (ECTOBSL9_0585) | - | 576938..577135 (+) | 198 | WP_063463791.1 | hypothetical protein | - |
| ECTOBSL9_RS02915 (ECTOBSL9_0586) | - | 577132..578022 (+) | 891 | WP_063463801.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| ECTOBSL9_RS17395 (ECTOBSL9_0587) | - | 578182..578556 (-) | 375 | Protein_577 | hypothetical protein | - |
| ECTOBSL9_RS02925 (ECTOBSL9_0588) | - | 578719..579009 (+) | 291 | WP_063463803.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| ECTOBSL9_RS02930 (ECTOBSL9_0589) | - | 579013..579300 (+) | 288 | WP_063463804.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
Sequence
Protein
Download Length: 138 a.a. Molecular weight: 14760.62 Da Isoelectric Point: 4.1958
>NTDB_id=149979 ECTOBSL9_RS16335 WP_082829697.1 559188..559604(+) (pilA2) [Ectothiorhodospira sp. BSL-9]
MQRQQGFTLIELMIVVAIIGILAAIALPAYQNYTVRAQVSEIILAASAGRTDISEYVSVEGELPPATYTVETQQSTKVAS
STWDGTDVIVTAATGIHDDVDGETINLRPNVTGNTANWTCGGSIPARFRPASCRDFDI
MQRQQGFTLIELMIVVAIIGILAAIALPAYQNYTVRAQVSEIILAASAGRTDISEYVSVEGELPPATYTVETQQSTKVAS
STWDGTDVIVTAATGIHDDVDGETINLRPNVTGNTANWTCGGSIPARFRPASCRDFDI
Nucleotide
Download Length: 417 bp
>NTDB_id=149979 ECTOBSL9_RS16335 WP_082829697.1 559188..559604(+) (pilA2) [Ectothiorhodospira sp. BSL-9]
ATGCAGAGACAACAAGGTTTTACTTTGATTGAACTGATGATCGTGGTGGCGATTATTGGGATTTTGGCGGCGATTGCGCT
GCCGGCTTATCAAAACTATACGGTTCGCGCTCAAGTCTCCGAGATCATTCTTGCGGCTTCCGCAGGACGAACTGATATTT
CCGAATATGTATCAGTGGAAGGCGAACTTCCACCGGCCACCTACACAGTGGAAACACAGCAATCGACAAAGGTGGCAAGC
TCAACATGGGATGGTACTGATGTAATTGTTACCGCGGCTACTGGCATACATGACGACGTAGACGGGGAAACAATTAACTT
GCGTCCTAACGTAACGGGCAATACTGCGAACTGGACCTGTGGTGGCTCAATCCCCGCTAGATTCCGTCCAGCGAGCTGTA
GAGACTTCGATATCTAG
ATGCAGAGACAACAAGGTTTTACTTTGATTGAACTGATGATCGTGGTGGCGATTATTGGGATTTTGGCGGCGATTGCGCT
GCCGGCTTATCAAAACTATACGGTTCGCGCTCAAGTCTCCGAGATCATTCTTGCGGCTTCCGCAGGACGAACTGATATTT
CCGAATATGTATCAGTGGAAGGCGAACTTCCACCGGCCACCTACACAGTGGAAACACAGCAATCGACAAAGGTGGCAAGC
TCAACATGGGATGGTACTGATGTAATTGTTACCGCGGCTACTGGCATACATGACGACGTAGACGGGGAAACAATTAACTT
GCGTCCTAACGTAACGGGCAATACTGCGAACTGGACCTGTGGTGGCTCAATCCCCGCTAGATTCCGTCCAGCGAGCTGTA
GAGACTTCGATATCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA2 | Legionella pneumophila str. Paris |
47.518 |
100 |
0.486 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
47.143 |
100 |
0.478 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
35.326 |
100 |
0.471 |
| pilA/pilA1 | Eikenella corrodens VA1 |
40.789 |
100 |
0.449 |
| pilE | Neisseria gonorrhoeae MS11 |
37.654 |
100 |
0.442 |
| comP | Acinetobacter baylyi ADP1 |
39.597 |
100 |
0.428 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
39.568 |
100 |
0.399 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
34.839 |
100 |
0.391 |
| pilA | Acinetobacter baumannii strain A118 |
36.879 |
100 |
0.377 |
| pilA | Pseudomonas aeruginosa PAK |
38.462 |
94.203 |
0.362 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
36.496 |
99.275 |
0.362 |