Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | BIS30_RS07835 | Genome accession | NZ_CP011051 |
| Coordinates | 1479688..1480029 (-) | Length | 113 a.a. |
| NCBI ID | WP_003221780.1 | Uniprot ID | - |
| Organism | Bacillus spizizenii strain T30 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1474688..1485029
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BIS30_RS07820 (BIS30_07820) | - | 1474927..1477695 (+) | 2769 | WP_003221774.1 | DEAD/DEAH box helicase | - |
| BIS30_RS07825 (BIS30_07825) | - | 1477824..1478681 (-) | 858 | WP_003221776.1 | Cof-type HAD-IIB family hydrolase | - |
| BIS30_RS07830 (BIS30_07830) | glcR | 1478687..1479463 (-) | 777 | WP_003221778.1 | transcriptional regulator GlcR | - |
| BIS30_RS07835 (BIS30_07835) | ssbB | 1479688..1480029 (-) | 342 | WP_003221780.1 | single-stranded DNA-binding protein SsbB | Machinery gene |
| BIS30_RS07840 (BIS30_07840) | ywpG | 1480106..1480489 (-) | 384 | WP_003221783.1 | DynA interaction protein YwpG | - |
| BIS30_RS07845 (BIS30_07845) | - | 1480666..1481075 (+) | 410 | Protein_1540 | YwpF-like family protein | - |
| BIS30_RS07850 (BIS30_07850) | - | 1481208..1481846 (-) | 639 | WP_003221786.1 | class A sortase | - |
Sequence
Protein
Download Length: 113 a.a. Molecular weight: 12459.15 Da Isoelectric Point: 7.8150
>NTDB_id=141779 BIS30_RS07835 WP_003221780.1 1479688..1480029(-) (ssbB) [Bacillus spizizenii strain T30]
MFNQVMLVGRLTKDPELRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENAEGVPVYVTEVLADTVRFMDPKPREKAAD
MFNQVMLVGRLTKDPELRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENAEGVPVYVTEVLADTVRFMDPKPREKAAD
Nucleotide
Download Length: 342 bp
>NTDB_id=141779 BIS30_RS07835 WP_003221780.1 1479688..1480029(-) (ssbB) [Bacillus spizizenii strain T30]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGAGCTTCGCTACACTTCCGCCGGTGCGGCAGTCGC
ACACGTTACGCTCGCGGTAAACCGCAGCTTCAAAAATGCTTCAGGTGAAATCGAGGCCGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTATATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGCAGAAGGCGTTCCCGTCTATGTAACGGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCCGATTGA
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGAGCTTCGCTACACTTCCGCCGGTGCGGCAGTCGC
ACACGTTACGCTCGCGGTAAACCGCAGCTTCAAAAATGCTTCAGGTGAAATCGAGGCCGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTATATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGCAGAAGGCGTTCCCGTCTATGTAACGGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCCGATTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
97.345 |
100 |
0.973 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.094 |
93.805 |
0.611 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
58.491 |
93.805 |
0.549 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
46.296 |
95.575 |
0.442 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
45.37 |
95.575 |
0.434 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
45.37 |
95.575 |
0.434 |
| ssbA | Streptococcus mutans UA159 |
45.283 |
93.805 |
0.425 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
44.444 |
95.575 |
0.425 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
44.444 |
95.575 |
0.425 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
44.444 |
95.575 |
0.425 |
| ssbB/cilA | Streptococcus mitis SK321 |
44.444 |
95.575 |
0.425 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
42.857 |
92.92 |
0.398 |