Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   UP17_RS24025 Genome accession   NZ_CP011008
Coordinates   5128634..5128996 (-) Length   120 a.a.
NCBI ID   WP_061465657.1    Uniprot ID   -
Organism   Peribacillus simplex strain SH-B26     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5123634..5133996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UP17_RS24005 (UP17_23990) - 5124416..5126032 (-) 1617 WP_061465653.1 ABC transporter substrate-binding protein -
  UP17_RS24010 (UP17_23995) - 5126079..5127047 (-) 969 WP_061465654.1 dipeptide ABC transporter ATP-binding protein -
  UP17_RS24015 (UP17_24000) - 5127028..5128032 (-) 1005 WP_155727488.1 ABC transporter ATP-binding protein -
  UP17_RS24020 (UP17_24005) - 5128272..5128541 (-) 270 WP_155727490.1 hypothetical protein -
  UP17_RS24025 (UP17_24010) ssbB 5128634..5128996 (-) 363 WP_061465657.1 single-stranded DNA-binding protein Machinery gene
  UP17_RS24030 (UP17_24015) - 5129366..5129800 (+) 435 WP_061465658.1 YwpF family protein -
  UP17_RS24035 (UP17_24020) - 5129909..5130190 (-) 282 WP_061465659.1 hypothetical protein -
  UP17_RS24040 (UP17_24025) fabZ 5130491..5130919 (-) 429 WP_061465660.1 3-hydroxyacyl-ACP dehydratase FabZ -
  UP17_RS24045 (UP17_24030) - 5131041..5131295 (-) 255 WP_061466309.1 DNA-directed RNA polymerase subunit beta -
  UP17_RS24050 (UP17_24035) - 5131456..5132304 (-) 849 WP_061465661.1 flagellar hook-basal body protein -
  UP17_RS24055 (UP17_24040) - 5132360..5133199 (-) 840 WP_061465663.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13692.60 Da        Isoelectric Point: 9.4186

>NTDB_id=141405 UP17_RS24025 WP_061465657.1 5128634..5128996(-) (ssbB) [Peribacillus simplex strain SH-B26]
MINQVTLVGRLTKDPELRYTPDGKAVSNITLAVNRNFRNTVGEYEADFVQCIIWKRSAENTAQYCKKGALIGITGRIQTR
RYENQEGKNVYVTEVVAERVQFIASKQNDIKPKDFEHIGL

Nucleotide


Download         Length: 363 bp        

>NTDB_id=141405 UP17_RS24025 WP_061465657.1 5128634..5128996(-) (ssbB) [Peribacillus simplex strain SH-B26]
ATGATTAACCAAGTTACCCTCGTCGGCAGGCTTACGAAGGATCCCGAATTAAGATATACACCAGACGGCAAGGCTGTTTC
CAATATAACGTTAGCAGTCAACCGGAACTTCCGTAATACTGTTGGTGAATATGAGGCGGACTTTGTACAGTGCATCATAT
GGAAAAGGTCTGCTGAAAATACTGCTCAGTACTGTAAAAAGGGTGCCTTAATCGGTATCACAGGCAGAATACAGACAAGG
AGATACGAAAATCAAGAGGGTAAAAATGTATATGTTACTGAAGTGGTCGCCGAGAGGGTTCAATTCATCGCATCTAAACA
AAACGATATTAAACCCAAGGATTTTGAACATATTGGCTTATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.281

95

0.592
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

88.333

0.567
  ssb Latilactobacillus sakei subsp. sakei 23K

56.604

88.333

0.5
  ssbB/cilA Streptococcus pneumoniae TIGR4

46.226

88.333

0.408
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.226

88.333

0.408
  ssbB/cilA Streptococcus pneumoniae Rx1

45.283

88.333

0.4
  ssbA Streptococcus mutans UA159

45.283

88.333

0.4
  ssbB/cilA Streptococcus pneumoniae D39

45.283

88.333

0.4
  ssbB/cilA Streptococcus pneumoniae R6

45.283

88.333

0.4
  ssbB/cilA Streptococcus mitis SK321

45.283

88.333

0.4
  ssbB/cilA Streptococcus mitis NCTC 12261

44.34

88.333

0.392
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

87.5

0.367

Multiple sequence alignment