Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   SB24_RS11940 Genome accession   NZ_CP010406
Coordinates   2492699..2493040 (+) Length   113 a.a.
NCBI ID   WP_039253548.1    Uniprot ID   -
Organism   Bacillus sp. Pc3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2487699..2498040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SB24_RS11905 (SB24_11905) - 2487821..2488618 (+) 798 WP_007614310.1 flagellar hook-basal body protein -
  SB24_RS11910 (SB24_11910) - 2488643..2489464 (+) 822 WP_032867498.1 flagellar hook-basal body protein -
  SB24_RS11915 (SB24_11915) - 2489482..2490546 (-) 1065 WP_007407559.1 tetratricopeptide repeat protein -
  SB24_RS11920 (SB24_11920) fabZ 2490742..2491167 (+) 426 WP_003151242.1 3-hydroxyacyl-ACP dehydratase FabZ -
  SB24_RS11925 (SB24_11925) mscL 2491224..2491619 (+) 396 WP_003151243.1 large conductance mechanosensitive channel protein MscL -
  SB24_RS11930 (SB24_11930) - 2491665..2492075 (-) 411 WP_012118638.1 YwpF-like family protein -
  SB24_RS11935 (SB24_11935) - 2492248..2492601 (+) 354 WP_003151247.1 hypothetical protein -
  SB24_RS11940 (SB24_11940) ssbB 2492699..2493040 (+) 342 WP_039253548.1 single-stranded DNA-binding protein Machinery gene
  SB24_RS11945 (SB24_11945) - 2493249..2494031 (+) 783 WP_039253550.1 DeoR/GlpR family DNA-binding transcription regulator -
  SB24_RS11950 (SB24_11950) - 2494028..2494885 (+) 858 WP_039063770.1 Cof-type HAD-IIB family hydrolase -
  SB24_RS11955 (SB24_11955) - 2494998..2497772 (-) 2775 WP_039253552.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12573.46 Da        Isoelectric Point: 9.5817

>NTDB_id=136894 SB24_RS11940 WP_039253548.1 2492699..2493040(+) (ssbB) [Bacillus sp. Pc3]
MFNHVMLVGRLTKDPELRFTAAGIPVAHITLAVNRNFKSASGETGTDFVNCTIWRKNAENTALYCQKGSMVGVSGRIQTR
SYEKTAGVKVYVTEVMADTVRFMDQKQKEPLAE

Nucleotide


Download         Length: 342 bp        

>NTDB_id=136894 SB24_RS11940 WP_039253548.1 2492699..2493040(+) (ssbB) [Bacillus sp. Pc3]
TTGTTTAACCACGTTATGCTTGTCGGCCGGCTGACGAAAGACCCGGAGCTCCGTTTTACAGCAGCGGGCATTCCCGTCGC
ACATATTACGTTGGCGGTAAACCGCAATTTTAAAAGCGCGTCGGGTGAAACCGGAACCGACTTCGTCAACTGCACCATCT
GGAGAAAAAACGCTGAAAACACGGCATTGTACTGCCAAAAAGGGTCAATGGTCGGTGTAAGCGGCAGAATCCAGACGAGA
AGCTATGAAAAGACAGCCGGCGTAAAAGTTTATGTGACCGAGGTCATGGCTGATACCGTTCGGTTTATGGATCAAAAACA
GAAAGAGCCGCTGGCTGAATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

76.106

100

0.761
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

93.805

0.54
  ssb Latilactobacillus sakei subsp. sakei 23K

51.887

93.805

0.487
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.018

100

0.46
  ssbA Streptococcus mutans UA159

41.593

100

0.416
  ssbB/cilA Streptococcus mitis NCTC 12261

41.593

100

0.416
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.593

100

0.416
  ssbB/cilA Streptococcus pneumoniae Rx1

40.708

100

0.407
  ssbB/cilA Streptococcus pneumoniae D39

40.708

100

0.407
  ssbB/cilA Streptococcus pneumoniae R6

40.708

100

0.407
  ssbB/cilA Streptococcus mitis SK321

40.708

100

0.407
  ssbB Lactococcus lactis subsp. cremoris KW2

37.5

99.115

0.372

Multiple sequence alignment