Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   QF06_RS04135 Genome accession   NZ_CP010014
Coordinates   853882..854460 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus sp. YP1     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 848882..859460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QF06_RS04115 (QF06_04115) hemAT 849393..850691 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  QF06_RS04120 (QF06_04120) - 850830..852359 (-) 1530 WP_041851020.1 FAD-dependent oxidoreductase -
  QF06_RS04125 (QF06_04125) - 852471..853328 (+) 858 WP_021479616.1 SDR family oxidoreductase -
  QF06_RS04130 (QF06_04130) - 853356..853589 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  QF06_RS04135 (QF06_04135) comK 853882..854460 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  QF06_RS04140 (QF06_04140) - 854507..855406 (-) 900 WP_041851019.1 SDR family oxidoreductase -
  QF06_RS04145 (QF06_04145) - 855623..855892 (+) 270 WP_038829151.1 excalibur calcium-binding domain-containing protein -
  QF06_RS04150 (QF06_04150) - 855936..857405 (-) 1470 WP_029317574.1 sodium:solute symporter -
  QF06_RS04155 (QF06_04155) - 857402..857602 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  QF06_RS04160 (QF06_04160) - 857801..858172 (-) 372 WP_014476361.1 hypothetical protein -
  QF06_RS04165 (QF06_04165) - 858324..858947 (+) 624 WP_010886465.1 VTT domain-containing protein -
  QF06_RS04170 (QF06_04170) lepB 858949..859455 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=133538 QF06_RS04135 WP_029317573.1 853882..854460(+) (comK) [Bacillus sp. YP1]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=133538 QF06_RS04135 WP_029317573.1 853882..854460(+) (comK) [Bacillus sp. YP1]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGAGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995

Multiple sequence alignment