Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   FORC9_RS14630 Genome accession   NZ_CP009984
Coordinates   3173871..3174974 (-) Length   367 a.a.
NCBI ID   WP_060532892.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_009     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3168871..3179974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC9_RS14600 (FORC9_2841) hemF 3169424..3170341 (-) 918 WP_039555003.1 oxygen-dependent coproporphyrinogen oxidase -
  FORC9_RS14605 (FORC9_2842) - 3170370..3170927 (-) 558 WP_060533005.1 L-threonylcarbamoyladenylate synthase -
  FORC9_RS14610 (FORC9_2843) purE 3171108..3171593 (+) 486 WP_011079087.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  FORC9_RS14615 (FORC9_2844) - 3171597..3172730 (+) 1134 WP_060532888.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  FORC9_RS14620 (FORC9_2845) - 3172796..3173365 (-) 570 WP_060532890.1 type I DNA topoisomerase -
  FORC9_RS14625 (FORC9_2846) - 3173389..3173868 (-) 480 WP_011079084.1 DUF494 family protein -
  FORC9_RS14630 (FORC9_2847) dprA 3173871..3174974 (-) 1104 WP_060532892.1 DNA-processing protein DprA Machinery gene
  FORC9_RS14635 (FORC9_2848) - 3174974..3176071 (-) 1098 WP_060532894.1 LysM peptidoglycan-binding domain-containing protein -
  FORC9_RS14640 (FORC9_2849) def 3176210..3176722 (+) 513 WP_011079081.1 peptide deformylase -
  FORC9_RS14645 (FORC9_2850) fmt 3176754..3177701 (+) 948 WP_060532896.1 methionyl-tRNA formyltransferase -
  FORC9_RS14650 (FORC9_2851) rsmB 3177785..3179065 (+) 1281 WP_060532898.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 39646.20 Da        Isoelectric Point: 6.9709

>NTDB_id=133481 FORC9_RS14630 WP_060532892.1 3173871..3174974(-) (dprA) [Vibrio vulnificus strain FORC_009]
MSQDELHAWLALSFTPNIGVKKLTKLLSIDSPLNILRYSQEQLLSLGLSSQQIITLRSSAQQDAEAALQWQQLSSQHHIL
TLHDGRYPPLLKETASPPCQLFVQGDPHCLTKPQIALVGSRHATMQGLQHARDFAAQLVQHGLVVTSGLALGIDGHAHDS
ALTAGGETVAVLGSGFQYIYPARHKGLAARIGQQGALVSEFRPNTKAKAEYFPRRNRIISGLSLGVLVVEAAEKSGSLIT
ARYAAEQGREVFALPNSLHITNARGGNLLIKSGACLVTGVEDVLSEVQTLLDWSTNQQADLFSSSNMEEQLPFPQLLANV
GNEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVNGGYIRRGRG

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=133481 FORC9_RS14630 WP_060532892.1 3173871..3174974(-) (dprA) [Vibrio vulnificus strain FORC_009]
ATGAGTCAAGATGAACTGCATGCTTGGTTAGCACTCAGTTTTACGCCCAATATTGGGGTTAAGAAGTTAACCAAGTTACT
CAGTATTGATTCCCCGCTCAATATTCTGCGTTATTCCCAAGAGCAGCTACTGTCGCTGGGGCTGTCGTCCCAGCAAATCA
TCACCTTGCGAAGTAGTGCTCAGCAAGACGCTGAAGCCGCCCTTCAATGGCAGCAGCTCTCCTCCCAGCATCATATTCTT
ACCCTTCATGATGGCCGATATCCGCCGCTGCTTAAGGAAACGGCTTCACCGCCTTGCCAACTGTTTGTACAGGGTGATCC
TCATTGTTTAACCAAACCACAAATTGCGCTGGTGGGGAGTCGTCATGCGACCATGCAAGGGTTGCAACATGCTCGCGACT
TTGCGGCTCAACTGGTACAGCATGGGTTGGTGGTGACCAGTGGTTTAGCGCTTGGGATTGATGGCCATGCCCATGATAGT
GCGCTGACAGCGGGAGGTGAAACCGTTGCCGTTCTTGGTTCGGGCTTTCAATATATTTATCCCGCTCGCCACAAAGGCCT
TGCCGCGAGAATTGGTCAGCAAGGTGCGCTGGTTTCGGAGTTTCGTCCCAATACCAAAGCCAAAGCCGAATACTTTCCTC
GTCGAAATCGAATCATTAGTGGCTTGTCTCTGGGGGTTTTGGTGGTCGAAGCGGCAGAGAAAAGCGGTTCTTTGATTACC
GCCCGTTATGCCGCTGAGCAAGGCCGAGAAGTCTTTGCTTTGCCTAACTCTCTCCATATTACCAACGCACGTGGCGGAAA
TTTGCTGATAAAAAGCGGAGCGTGTTTGGTCACTGGGGTTGAAGATGTGCTGAGTGAAGTGCAAACCTTGCTCGACTGGT
CGACAAACCAACAAGCGGATTTATTTTCTTCCTCTAATATGGAAGAACAATTGCCATTTCCTCAGCTGTTAGCTAACGTA
GGTAATGAGGCTACACCAGTTGATATTTTAGCAAACAGGACCAATATACCTGTGCAAGAAGTCATGATGCAGCTCTTGGA
GCTTGAGCTTTCAGGGCATGTTGTTGCAGTTAATGGTGGCTATATTCGAAGGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(76-278)

DprA winged helix domain (DprA_WH)

(315-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

69.146

98.91

0.684
  dprA Vibrio cholerae strain A1552

57.682

100

0.583
  dprA Glaesserella parasuis strain SC1401

45.257

100

0.455
  dprA Legionella pneumophila strain ERS1305867

43.767

98.365

0.431
  dprA Haemophilus influenzae Rd KW20

41.444

100

0.422
  dprA Neisseria meningitidis MC58

37.531

100

0.406
  dprA Neisseria meningitidis strain C311

37.531

100

0.406
  dprA Neisseria gonorrhoeae strain FA1090

36.962

100

0.398
  dprA Neisseria gonorrhoeae MS11

36.709

100

0.395
  dprA Acinetobacter baylyi ADP1

38.005

100

0.384
  dprA Acinetobacter baumannii D1279779

40.785

90.191

0.368
  dprA Acinetobacter baumannii strain A118

40.181

90.191

0.362

Multiple sequence alignment