Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   IX91_RS13880 Genome accession   NZ_CP009354
Coordinates   3029745..3031439 (-) Length   564 a.a.
NCBI ID   WP_050809758.1    Uniprot ID   -
Organism   Vibrio tubiashii ATCC 19109     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3024745..3036439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IX91_RS13860 (IX91_14145) - 3025399..3026226 (-) 828 WP_004743304.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  IX91_RS13865 (IX91_14150) - 3026320..3027840 (-) 1521 WP_004743303.1 SPOR domain-containing protein -
  IX91_RS13870 (IX91_14155) aroB 3027933..3029021 (-) 1089 WP_004743302.1 3-dehydroquinate synthase -
  IX91_RS13875 (IX91_14160) aroK 3029050..3029568 (-) 519 WP_004743301.1 shikimate kinase AroK -
  IX91_RS13880 (IX91_14165) pilQ 3029745..3031439 (-) 1695 WP_050809758.1 type IV pilus secretin PilQ Machinery gene
  IX91_RS13885 (IX91_14170) pilP 3031453..3031956 (-) 504 WP_004743299.1 pilus assembly protein PilP Machinery gene
  IX91_RS13890 (IX91_14175) pilO 3031946..3032533 (-) 588 WP_004743298.1 type 4a pilus biogenesis protein PilO Machinery gene
  IX91_RS13895 (IX91_14180) pilN 3032520..3033083 (-) 564 WP_004743297.1 PilN domain-containing protein Machinery gene
  IX91_RS13900 (IX91_14185) pilM 3033073..3034068 (-) 996 WP_004743296.1 type IV pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 564 a.a.        Molecular weight: 62035.78 Da        Isoelectric Point: 4.5407

>NTDB_id=128870 IX91_RS13880 WP_050809758.1 3029745..3031439(-) (pilQ) [Vibrio tubiashii ATCC 19109]
MNRIKGLVAFTRRCLQWLTLFVVFLPSVVYAQEQNDNLLQGLDFKIDEQRNAQIVLTLSDSRAVVDIQKVAQGLSITLPQ
TQVTEALIKVFDVTEFGTVVRDIEVFRHPDKVELIAAINGDFRYHDQLEGTRLQVTVENSSDGQQVDKTSLLDKPGKKLS
LNFQDIPVRNVLQLIAHYNDFNLVVSDSVTGNLTLRLEEVSWQKVLDIILQVKGLDKRVEGSIVLVAPKAELDAREQQML
EKARLQEQLGELSSDIIQVKFAKAADIADLIDGGGEFSMLSPRGSLSVDERTNTLLIRDLEQNVDVIRSIVESLDIPVKQ
VQIEARIVTVNEGNLDELGVRWGFSNTNGSTSTGATIEDNVFDVVPIDDMLNVNLGATSANASTIAFQVAKLGSDMLLDL
ELSALQRESKAEVISSPRLITTNKKPAYIEQGSEIPYLESSSSGATSVSFKKAVLSLKVTPQITPDNRLILDLSVTQDRP
GDVVKTGTGEAVAINTQRIGTQVLVENGETVVLGGIFQHSVTDAVDKVPFFGDLPLLGALFRRSYQQMGKSELLIFVTPR
VVIE

Nucleotide


Download         Length: 1695 bp        

>NTDB_id=128870 IX91_RS13880 WP_050809758.1 3029745..3031439(-) (pilQ) [Vibrio tubiashii ATCC 19109]
ATGAATAGGATAAAAGGATTGGTGGCTTTTACTAGACGCTGTTTGCAATGGCTCACCTTGTTTGTGGTGTTCCTACCCAG
TGTTGTTTATGCCCAAGAGCAAAATGACAATCTTCTGCAAGGCTTGGATTTTAAAATCGATGAGCAGCGTAACGCGCAAA
TTGTCCTAACCTTGTCCGACTCACGTGCTGTGGTCGATATACAAAAAGTGGCGCAGGGGTTAAGTATTACCTTGCCACAA
ACCCAAGTGACGGAAGCCTTAATTAAGGTATTTGACGTGACCGAGTTTGGTACGGTAGTGCGTGACATTGAAGTCTTTCG
CCATCCAGACAAGGTCGAGTTGATAGCGGCAATTAATGGGGACTTTCGTTACCACGATCAACTTGAAGGGACGCGCCTGC
AAGTGACCGTGGAAAATAGTAGCGATGGTCAGCAGGTAGACAAAACAAGCCTTCTCGATAAGCCAGGCAAAAAGCTATCA
CTTAATTTTCAAGATATTCCGGTTAGAAATGTGTTGCAACTGATCGCCCATTACAATGATTTCAACTTGGTTGTTTCCGA
TTCAGTGACTGGCAATCTGACCTTACGCCTTGAAGAGGTATCATGGCAGAAGGTGCTCGACATCATCTTGCAGGTCAAAG
GGTTAGATAAACGTGTTGAAGGAAGCATTGTTTTAGTCGCGCCAAAAGCGGAACTGGATGCTCGTGAGCAGCAGATGCTG
GAGAAAGCGCGTTTACAGGAACAGTTAGGGGAACTGTCGTCGGACATCATCCAAGTTAAGTTTGCCAAGGCGGCCGATAT
TGCTGACTTAATCGATGGGGGCGGAGAGTTTAGCATGCTGTCCCCTCGGGGTTCTTTGAGTGTGGACGAGCGCACCAACA
CCCTATTGATTCGAGATTTAGAGCAAAATGTCGATGTTATTCGTTCTATTGTCGAATCACTCGATATTCCCGTTAAGCAG
GTGCAAATCGAGGCGAGGATTGTCACGGTTAATGAAGGCAACTTGGATGAGCTTGGGGTACGTTGGGGATTTAGTAACAC
CAACGGCAGTACTTCTACTGGCGCCACTATTGAAGATAACGTATTCGATGTTGTGCCAATCGATGACATGCTTAATGTGA
ATCTTGGCGCAACTTCTGCCAATGCTTCGACCATCGCATTTCAAGTCGCCAAGCTTGGCTCCGACATGTTGCTTGACCTT
GAGTTATCGGCATTACAACGAGAGTCGAAAGCAGAAGTCATCTCAAGTCCGCGTTTGATCACAACCAATAAAAAGCCAGC
CTATATTGAGCAGGGCAGCGAGATTCCTTATCTAGAGTCATCTTCAAGTGGGGCAACCAGCGTTTCGTTTAAGAAGGCAG
TACTCAGTTTAAAAGTTACGCCACAGATCACCCCTGATAATCGGCTAATTCTGGATTTGAGTGTGACCCAAGATAGGCCA
GGTGATGTGGTGAAAACCGGTACCGGAGAAGCGGTGGCGATTAATACCCAAAGAATCGGTACCCAAGTGCTGGTGGAGAA
TGGAGAAACCGTGGTGCTCGGGGGCATTTTTCAACACAGCGTGACAGATGCGGTCGACAAGGTGCCTTTCTTTGGTGATT
TGCCTCTGCTAGGGGCGCTATTTCGTCGTTCTTACCAACAAATGGGCAAAAGCGAACTGTTAATTTTCGTCACCCCAAGG
GTAGTGATTGAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(404-562)

Bacterial type II/III secretion system short domain (Secretin_N)

(256-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

66.969

97.695

0.654
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

64.111

100

0.652
  pilQ Vibrio cholerae strain A1552

64.111

100

0.652
  pilQ Pseudomonas aeruginosa PAK

40.768

96.986

0.395
  pilQ Legionella pneumophila strain ERS1305867

41.527

95.213

0.395
  pilQ Legionella pneumophila strain Lp02

41.527

95.213

0.395
  pilQ Acinetobacter baumannii D1279779

37.331

100

0.392
  pilQ Acinetobacter baumannii strain A118

37.331

100

0.392
  comQ Acinetobacter baylyi ADP1

39.099

98.404

0.385

Multiple sequence alignment