Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   IX91_RS00180 Genome accession   NZ_CP009354
Coordinates   39732..40850 (+) Length   372 a.a.
NCBI ID   WP_004743631.1    Uniprot ID   -
Organism   Vibrio tubiashii ATCC 19109     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 34732..45850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IX91_RS00160 (IX91_00170) rsmB 35677..36957 (-) 1281 WP_004743627.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  IX91_RS00165 (IX91_00175) fmt 37030..37977 (-) 948 WP_004743628.1 methionyl-tRNA formyltransferase -
  IX91_RS00170 (IX91_00180) def 38005..38526 (-) 522 WP_004743629.1 peptide deformylase -
  IX91_RS00175 (IX91_00185) - 38703..39728 (+) 1026 WP_004743630.1 LysM peptidoglycan-binding domain-containing protein -
  IX91_RS00180 (IX91_00190) dprA 39732..40850 (+) 1119 WP_004743631.1 DNA-processing protein DprA Machinery gene
  IX91_RS00185 (IX91_00195) - 40853..41332 (+) 480 WP_038197518.1 DUF494 family protein -
  IX91_RS00190 (IX91_00200) - 41348..41932 (+) 585 WP_004743633.1 type I DNA topoisomerase -
  IX91_RS00195 (IX91_00205) - 41980..43113 (-) 1134 WP_004743634.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  IX91_RS00200 (IX91_00210) purE 43117..43602 (-) 486 WP_004743635.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  IX91_RS00205 (IX91_00215) - 43797..44354 (+) 558 WP_004743636.1 L-threonylcarbamoyladenylate synthase -
  IX91_RS00210 (IX91_00220) hemF 44376..45293 (+) 918 WP_004743638.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 40078.86 Da        Isoelectric Point: 6.6118

>NTDB_id=128839 IX91_RS00180 WP_004743631.1 39732..40850(+) (dprA) [Vibrio tubiashii ATCC 19109]
MTNEELAAWLSLNFTPRVGPKTFSRLLAMDSPLNIVQSELPALLALGLSAQQANYLKNRAAKEVAQCFEWQQQSAQHNII
TKQESSYPALLEQAVGSPPVLFVQGEVNGLSEPQIAMVGSRNASPEGLNTARSFARALVEQGLTVTSGLALGVDGYAHDG
ALQGGGRTLAVLGSGLETIYPARHRELARRILDSGGALVSEFHPKAKPKADHFPRRNRIISGLSVGVLVVEAAEKSGSLI
TARYAIEQGRDVFAIPGSIHDSNARGCNLLIKQGACLVMRVQDIVDEIETLLRWSNSSKPPIQNELFEEIDSKEELPFPL
LLANVGSKAIPVDILANRTNIPVQDVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=128839 IX91_RS00180 WP_004743631.1 39732..40850(+) (dprA) [Vibrio tubiashii ATCC 19109]
GTGACCAATGAAGAGCTCGCGGCATGGCTGTCGCTTAACTTTACCCCTAGAGTCGGTCCGAAAACCTTTTCTCGTCTTCT
CGCAATGGACTCACCATTAAACATTGTTCAATCTGAACTTCCTGCTCTTTTAGCCCTTGGATTAAGCGCACAACAGGCTA
ACTATCTAAAAAACCGAGCGGCGAAAGAGGTTGCGCAGTGCTTTGAGTGGCAACAACAATCTGCTCAACACAATATCATT
ACTAAGCAAGAGAGCAGTTACCCGGCATTACTTGAACAGGCGGTAGGCTCTCCTCCGGTTTTATTCGTTCAAGGAGAGGT
GAACGGCTTGTCTGAACCTCAAATTGCGATGGTCGGTAGTCGCAATGCCAGTCCTGAAGGGCTCAATACCGCGCGGAGCT
TTGCTCGTGCTTTGGTTGAACAAGGTCTGACGGTTACAAGTGGTTTGGCCCTAGGTGTGGATGGCTACGCCCATGATGGG
GCGCTGCAAGGAGGAGGACGTACACTCGCGGTTCTCGGTAGCGGTCTAGAAACTATTTACCCAGCTAGACATCGTGAACT
TGCTAGGAGAATCCTTGATAGTGGAGGGGCGCTTGTTTCGGAGTTTCATCCCAAAGCGAAGCCTAAAGCCGATCATTTTC
CGCGCCGCAATCGAATTATTAGTGGCCTATCTGTTGGAGTGCTGGTGGTTGAAGCCGCAGAGAAAAGTGGCTCCTTGATT
ACGGCGCGCTATGCCATAGAGCAAGGGCGTGACGTGTTTGCTATTCCGGGTTCTATCCACGATTCAAATGCACGCGGTTG
TAACCTGTTGATTAAGCAAGGTGCGTGTTTGGTGATGAGAGTTCAGGACATAGTTGATGAAATAGAGACGCTTTTACGCT
GGTCTAATTCCAGTAAGCCACCGATTCAAAATGAACTTTTCGAGGAAATAGATAGTAAAGAAGAATTGCCATTTCCTCTG
CTGTTAGCTAACGTAGGAAGTAAGGCTATACCAGTTGATATTCTTGCAAACAGGACCAATATACCTGTGCAGGACGTCAT
GATGCAGCTCTTGGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(321-365)

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

62.331

99.194

0.618
  dprA Vibrio cholerae strain A1552

59.14

100

0.591
  dprA Glaesserella parasuis strain SC1401

43.085

100

0.435
  dprA Legionella pneumophila strain ERS1305867

44.722

96.774

0.433
  dprA Neisseria gonorrhoeae MS11

36.79

100

0.401
  dprA Neisseria meningitidis strain C311

37.186

100

0.398
  dprA Neisseria meningitidis MC58

37.186

100

0.398
  dprA Neisseria gonorrhoeae strain FA1090

36.543

100

0.398
  dprA Haemophilus influenzae Rd KW20

41.714

94.086

0.392
  dprA Acinetobacter baumannii strain A118

42.059

91.398

0.384
  dprA Acinetobacter baumannii D1279779

42.059

91.398

0.384
  dprA Acinetobacter baylyi ADP1

41.033

88.441

0.363

Multiple sequence alignment