Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BF38_RS20075 Genome accession   NZ_CP009335
Coordinates   3232720..3233055 (+) Length   111 a.a.
NCBI ID   WP_000982007.1    Uniprot ID   A0A7D4DM73
Organism   Bacillus thuringiensis strain HD1011     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3227720..3238055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BF38_RS20050 (BF38_3374) - 3227984..3228745 (-) 762 WP_000499706.1 hypothetical protein -
  BF38_RS20055 (BF38_3375) - 3228855..3229502 (+) 648 WP_000165938.1 HD domain-containing protein -
  BF38_RS20060 (BF38_3376) - 3229499..3231394 (+) 1896 WP_000783202.1 ABC-F family ATP-binding cassette domain-containing protein -
  BF38_RS20065 (BF38_3377) - 3231470..3232201 (+) 732 WP_001260645.1 Bax inhibitor-1/YccA family membrane protein -
  BF38_RS20070 (BF38_3378) - 3232307..3232561 (+) 255 WP_000975125.1 DUF4318 domain-containing protein -
  BF38_RS20075 (BF38_3379) ssbA 3232720..3233055 (+) 336 WP_000982007.1 single-stranded DNA-binding protein Machinery gene
  BF38_RS20080 (BF38_3380) - 3233604..3234731 (+) 1128 WP_000692591.1 conserved virulence factor C family protein -
  BF38_RS20085 (BF38_3381) - 3234735..3235118 (+) 384 WP_000634879.1 thiol-disulfide oxidoreductase DCC family protein -
  BF38_RS20090 (BF38_3382) - 3235202..3235636 (+) 435 WP_000063713.1 BrxA/BrxB family bacilliredoxin -
  BF38_RS20095 (BF38_3383) - 3235686..3236462 (+) 777 WP_000637435.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12757.59 Da        Isoelectric Point: 9.4344

>NTDB_id=128699 BF38_RS20075 WP_000982007.1 3232720..3233055(+) (ssbA) [Bacillus thuringiensis strain HD1011]
MMNRVVLIGRLTKEPELYYTKQGAAYARICIAVNRGFRNSLGEQQVDFINCVVWRKSAENVTEYCKKGSLVGITGRIQTS
NYDDEQGKRIYRTEVVIESITFLERRREGAS

Nucleotide


Download         Length: 336 bp        

>NTDB_id=128699 BF38_RS20075 WP_000982007.1 3232720..3233055(+) (ssbA) [Bacillus thuringiensis strain HD1011]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAACAAGGCGCCGCTTATGC
AAGAATATGTATTGCGGTGAATAGAGGATTTCGAAATAGTTTAGGTGAACAACAAGTCGATTTTATTAATTGTGTCGTTT
GGCGAAAATCGGCTGAGAATGTAACTGAATATTGTAAGAAGGGGTCACTTGTTGGGATTACAGGGCGTATTCAGACGAGT
AATTACGATGATGAACAAGGCAAGAGAATATATAGAACTGAAGTTGTGATTGAGAGTATTACCTTTTTGGAGAGAAGGCG
GGAGGGGGCATCGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7D4DM73

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.434

95.495

0.568
  ssb Latilactobacillus sakei subsp. sakei 23K

56.604

95.495

0.541
  ssbB Bacillus subtilis subsp. subtilis str. 168

51.786

100

0.523
  ssbB Lactococcus lactis subsp. cremoris KW2

45.714

94.595

0.432
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.636

99.099

0.432
  ssbB/cilA Streptococcus mitis NCTC 12261

40.909

99.099

0.405
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.909

99.099

0.405
  ssbB/cilA Streptococcus pneumoniae Rx1

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae D39

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae R6

40

99.099

0.396
  ssbB/cilA Streptococcus mitis SK321

40

99.099

0.396
  ssbA Streptococcus mutans UA159

40

99.099

0.396

Multiple sequence alignment