Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   VV93_RS15060 Genome accession   NZ_CP009261
Coordinates   3247484..3248587 (-) Length   367 a.a.
NCBI ID   WP_039555013.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 93U204     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3242484..3253587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV93_RS15030 (VV93_v1c29390) hemF 3243037..3243954 (-) 918 WP_039555003.1 oxygen-dependent coproporphyrinogen oxidase -
  VV93_RS15035 (VV93_v1c29400) - 3243983..3244540 (-) 558 WP_013570891.1 L-threonylcarbamoyladenylate synthase -
  VV93_RS15040 (VV93_v1c29410) purE 3244721..3245206 (+) 486 WP_039555005.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  VV93_RS15045 (VV93_v1c29420) - 3245210..3246343 (+) 1134 WP_039555007.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  VV93_RS15050 (VV93_v1c29430) - 3246409..3246978 (-) 570 WP_039555009.1 type I DNA topoisomerase -
  VV93_RS15055 (VV93_v1c29440) - 3247002..3247481 (-) 480 WP_039555010.1 DUF494 family protein -
  VV93_RS15060 (VV93_v1c29450) dprA 3247484..3248587 (-) 1104 WP_039555013.1 DNA-processing protein DprA Machinery gene
  VV93_RS15065 (VV93_v1c29460) - 3248587..3249684 (-) 1098 WP_039555016.1 LysM peptidoglycan-binding domain-containing protein -
  VV93_RS15070 (VV93_v1c29470) def 3249823..3250335 (+) 513 WP_038964320.1 peptide deformylase -
  VV93_RS15075 (VV93_v1c29480) fmt 3250367..3251314 (+) 948 WP_039555018.1 methionyl-tRNA formyltransferase -
  VV93_RS15080 (VV93_v1c29490) rsmB 3251398..3252678 (+) 1281 WP_039555020.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 39577.08 Da        Isoelectric Point: 6.7801

>NTDB_id=127832 VV93_RS15060 WP_039555013.1 3247484..3248587(-) (dprA) [Vibrio vulnificus strain 93U204]
MSQDELHAWLALSFTPNIGVKKLTKLLSIDSPLNILRYSQEQLLSLGLSSQQIITLRSSAQQDAEVALQWQQLSSQHHIL
TLHDGLYPPLLKETASPPCQLFVQGDPHCLTKPQIALVGSRHATMQGLQHARDFAAQLVQHGLVVTSGLALGIDGHAHDG
ALTAGGETVAVLGSGFQHIYPARHKGLAERIGQQGALVSEFRPNTKAKAEHFPRRNRIISGLSLGVLVVEAAEKSGSLIT
ARYAAEQGREVFALPNSLHITNARGGNLLIKSGACLVTGVEDVLSEVQTLLDWSTNQQADLFSSSNTEEQLPFPQLLANV
GNEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVNGGYIRRGRG

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=127832 VV93_RS15060 WP_039555013.1 3247484..3248587(-) (dprA) [Vibrio vulnificus strain 93U204]
ATGAGTCAAGATGAACTGCATGCTTGGTTAGCACTCAGTTTTACACCCAATATTGGGGTTAAGAAGCTAACCAAGTTACT
CAGTATTGATTCCCCGCTCAATATTCTGCGTTATTCCCAAGAGCAGCTACTGTCGCTGGGGCTGTCGTCCCAGCAAATCA
TCACCTTGCGAAGTAGTGCTCAGCAAGACGCTGAAGTCGCCCTTCAATGGCAGCAACTCTCCTCCCAGCATCATATTCTT
ACCCTTCATGATGGCCTATATCCGCCGCTGCTTAAGGAAACGGCGTCACCACCTTGCCAGCTGTTTGTACAGGGTGATCC
TCATTGTTTAACCAAGCCACAAATTGCGCTGGTGGGGAGTCGTCATGCGACCATGCAAGGGTTGCAACATGCTCGCGACT
TTGCGGCTCAACTGGTACAGCATGGGTTGGTGGTGACCAGTGGTTTAGCGCTTGGGATTGATGGCCATGCCCATGATGGT
GCGCTGACGGCGGGAGGCGAAACCGTTGCCGTTCTTGGTTCGGGCTTTCAACATATTTATCCCGCTCGCCACAAAGGCCT
TGCCGAGAGAATTGGTCAGCAAGGTGCGCTGGTTTCGGAGTTTCGTCCCAATACTAAAGCCAAAGCCGAACATTTTCCTC
GTCGAAATCGAATCATTAGTGGCTTGTCTCTGGGGGTTTTGGTGGTCGAAGCGGCAGAGAAAAGCGGTTCTTTGATTACC
GCCCGTTATGCCGCTGAGCAAGGTCGAGAAGTCTTTGCTTTGCCTAACTCTCTCCATATTACCAATGCACGCGGCGGAAA
CTTGCTGATAAAAAGCGGAGCGTGTTTAGTCACTGGGGTAGAAGATGTGCTGAGTGAAGTGCAAACTTTGCTCGACTGGT
CGACAAACCAACAAGCGGATTTATTTTCTTCCTCTAATACGGAAGAACAATTGCCATTTCCTCAGCTGTTAGCTAACGTA
GGTAATGAGGCTACACCAGTTGATATTCTAGCAAACAGGACCAATATACCTGTGCAAGAAGTCATGATGCAGCTCTTGGA
GCTTGAGCTTTCAGGGCATGTTGTTGCAGTTAACGGTGGCTATATTCGAAGGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(315-360)

DNA recombination-mediator protein A (DNA_processg_A)

(76-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

70.137

99.455

0.698
  dprA Vibrio cholerae strain A1552

58.76

100

0.594
  dprA Glaesserella parasuis strain SC1401

45.283

100

0.458
  dprA Legionella pneumophila strain ERS1305867

44.598

98.365

0.439
  dprA Haemophilus influenzae Rd KW20

41.444

100

0.422
  dprA Neisseria meningitidis MC58

37.783

100

0.409
  dprA Neisseria meningitidis strain C311

37.783

100

0.409
  dprA Neisseria gonorrhoeae strain FA1090

37.215

100

0.401
  dprA Neisseria gonorrhoeae MS11

36.962

100

0.398
  dprA Acinetobacter baylyi ADP1

38.005

100

0.384
  dprA Acinetobacter baumannii D1279779

41.692

90.191

0.376
  dprA Acinetobacter baumannii strain A118

41.088

90.191

0.371

Multiple sequence alignment