Detailed information NTG0126452

Bioinformatically predicted

Overview

• Name: comGC
• Type: Machinery gene
• Locus tag: NCDO2118_RS11625
• Genome accession: NZ_CP009054
• Coordinates: 2368562..2368945 (-)
• Length: 127 a.a.
• NCBI ID: WP_012898622.1
• Uniprot ID: -
• Organism: Lactococcus lactis subsp. lactis NCDO 2118
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2363562..2373945

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NCDO2118_RS11585 (NCDO2118_2221)	-	2364098..2364907 (-)	810	WP_012898616.1	metal ABC transporter permease	-
NCDO2118_RS11590 (NCDO2118_2222)	-	2364900..2365637 (-)	738	WP_012898617.1	metal ABC transporter ATP-binding protein	-
NCDO2118_RS11595 (NCDO2118_2223)	-	2365814..2366656 (-)	843	WP_012898618.1	metal ABC transporter substrate-binding protein	-
NCDO2118_RS11600 (NCDO2118_2224)	-	2366653..2367090 (-)	438	WP_010906313.1	zinc-dependent MarR family transcriptional regulator	-
NCDO2118_RS11605 (NCDO2118_2225)	comGG	2367171..2367455 (-)	285	WP_012898619.1	competence type IV pilus minor pilin ComGG	Machinery gene
NCDO2118_RS11610 (NCDO2118_2226)	comGF	2367494..2367940 (-)	447	WP_038603761.1	competence type IV pilus minor pilin ComGF	Machinery gene
NCDO2118_RS11615 (NCDO2118_2227)	comGE	2367903..2368199 (-)	297	WP_010906316.1	competence type IV pilus minor pilin ComGE	Machinery gene
NCDO2118_RS11620 (NCDO2118_2228)	comGD	2368171..2368602 (-)	432	WP_012898621.1	competence type IV pilus minor pilin ComGD	Machinery gene
NCDO2118_RS11625 (NCDO2118_2229)	comGC	2368562..2368945 (-)	384	WP_012898622.1	competence type IV pilus major pilin ComGC	Machinery gene
NCDO2118_RS11630 (NCDO2118_2230)	comGB	2368959..2370032 (-)	1074	WP_012898623.1	competence type IV pilus assembly protein ComGB	Machinery gene
NCDO2118_RS11635 (NCDO2118_2231)	comGA	2369926..2370864 (-)	939	WP_012898624.1	competence type IV pilus ATPase ComGA	Machinery gene
NCDO2118_RS11640	-	2371134..2371316 (-)	183	WP_038603763.1	hypothetical protein	-
NCDO2118_RS11645 (NCDO2118_2232)	-	2371307..2372062 (-)	756	WP_012898625.1	hypothetical protein	-

Sequence

Protein

• Length: 127 a.a.
• Molecular weight: 14825.41 Da
• Isoelectric Point: 8.4563

>NTDB_id=126452 NCDO2118_RS11625 WP_012898622.1 2368562..2368945(-) (comGC) [Lactococcus lactis subsp. lactis NCDO 2118]
MERTKKFILKKIQKIFLFVKICEKKCRQKELRAFTLIEMLIVLAIISILILLFVPNLIKEKSQVQKTGEAAVVKVVESQA
QLYELDHDDEKPSLSELLSAGMITQKQISAYDNYYDQNKNEERNFND

Nucleotide

• Length: 384 bp

>NTDB_id=126452 NCDO2118_RS11625 WP_012898622.1 2368562..2368945(-) (comGC) [Lactococcus lactis subsp. lactis NCDO 2118]
ATGGAAAGAACTAAGAAGTTTATTTTAAAGAAAATACAAAAAATATTTTTATTCGTTAAAATTTGTGAAAAAAAATGCCG
TCAGAAAGAGCTAAGAGCTTTTACTTTGATAGAGATGTTAATTGTACTAGCTATTATTAGTATTTTGATATTACTATTTG
TTCCAAATTTAATTAAAGAAAAATCACAAGTTCAAAAAACTGGAGAAGCGGCAGTTGTAAAAGTAGTAGAAAGTCAAGCT
CAACTTTATGAATTAGATCATGATGATGAGAAGCCGAGTCTGTCAGAATTGCTCAGCGCTGGGATGATTACTCAAAAACA
AATTTCTGCTTACGATAATTACTATGATCAGAATAAAAATGAAGAACGAAATTTTAATGACTAG

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (32-52)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGC	Lactococcus lactis subsp. cremoris KW2	80.172	91.339	0.732
comYC	Streptococcus mutans UA159	56.436	79.528	0.449
comYC	Streptococcus mutans UA140	56.436	79.528	0.449
comGC/cglC	Streptococcus mitis SK321	55.446	79.528	0.441
comYC	Streptococcus gordonii str. Challis substr. CH1	55.556	77.953	0.433
comGC/cglC	Streptococcus pneumoniae TIGR4	53.465	79.528	0.425
comGC/cglC	Streptococcus pneumoniae Rx1	53.465	79.528	0.425
comGC/cglC	Streptococcus pneumoniae D39	53.465	79.528	0.425
comGC/cglC	Streptococcus pneumoniae R6	53.465	79.528	0.425
comGC/cglC	Streptococcus mitis NCTC 12261	57.303	70.079	0.402
comYC	Streptococcus suis isolate S10	55.682	69.291	0.386