Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ECVR50_RS14540 Genome accession   NZ_CP011134
Coordinates   2916947..2917684 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli VR50     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2911947..2922684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECVR50_RS14525 (ECVR50_2847) clpC 2912401..2914974 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  ECVR50_RS14530 (ECVR50_2849) yfiH 2915104..2915835 (-) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  ECVR50_RS14535 (ECVR50_2850) rluD 2915832..2916812 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ECVR50_RS14540 (ECVR50_2851) comL 2916947..2917684 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  ECVR50_RS14545 (ECVR50_2852) - 2917788..2919134 (+) 1347 WP_024186383.1 IS4-like element IS4 family transposase -
  ECVR50_RS14555 (ECVR50_2853) raiA 2919393..2919734 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  ECVR50_RS29370 (ECVR50_2854) pheL 2919838..2919885 (+) 48 WP_010723158.1 phe operon leader peptide -
  ECVR50_RS14560 (ECVR50_2855) pheA 2919984..2921144 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  ECVR50_RS14565 (ECVR50_2856) tyrA 2921187..2922308 (-) 1122 WP_000225229.1 bifunctional chorismate mutase/prephenate dehydrogenase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=126448 ECVR50_RS14540 WP_000197686.1 2916947..2917684(+) (comL) [Escherichia coli VR50]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=126448 ECVR50_RS14540 WP_000197686.1 2916947..2917684(+) (comL) [Escherichia coli VR50]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment