Detailed information NTG0126451

Bioinformatically predicted

Overview

• Name: comGD
• Type: Machinery gene
• Locus tag: NCDO2118_RS11620
• Genome accession: NZ_CP009054
• Coordinates: 2368171..2368602 (-)
• Length: 143 a.a.
• NCBI ID: WP_012898621.1
• Uniprot ID: -
• Organism: Lactococcus lactis subsp. lactis NCDO 2118
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2363171..2373602

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NCDO2118_RS11580 (NCDO2118_2220)	-	2363194..2364060 (+)	867	WP_012898615.1	RluA family pseudouridine synthase	-
NCDO2118_RS11585 (NCDO2118_2221)	-	2364098..2364907 (-)	810	WP_012898616.1	metal ABC transporter permease	-
NCDO2118_RS11590 (NCDO2118_2222)	-	2364900..2365637 (-)	738	WP_012898617.1	metal ABC transporter ATP-binding protein	-
NCDO2118_RS11595 (NCDO2118_2223)	-	2365814..2366656 (-)	843	WP_012898618.1	metal ABC transporter substrate-binding protein	-
NCDO2118_RS11600 (NCDO2118_2224)	-	2366653..2367090 (-)	438	WP_010906313.1	zinc-dependent MarR family transcriptional regulator	-
NCDO2118_RS11605 (NCDO2118_2225)	comGG	2367171..2367455 (-)	285	WP_012898619.1	competence type IV pilus minor pilin ComGG	Machinery gene
NCDO2118_RS11610 (NCDO2118_2226)	comGF	2367494..2367940 (-)	447	WP_038603761.1	competence type IV pilus minor pilin ComGF	Machinery gene
NCDO2118_RS11615 (NCDO2118_2227)	comGE	2367903..2368199 (-)	297	WP_010906316.1	competence type IV pilus minor pilin ComGE	Machinery gene
NCDO2118_RS11620 (NCDO2118_2228)	comGD	2368171..2368602 (-)	432	WP_012898621.1	competence type IV pilus minor pilin ComGD	Machinery gene
NCDO2118_RS11625 (NCDO2118_2229)	comGC	2368562..2368945 (-)	384	WP_012898622.1	competence type IV pilus major pilin ComGC	Machinery gene
NCDO2118_RS11630 (NCDO2118_2230)	comGB	2368959..2370032 (-)	1074	WP_012898623.1	competence type IV pilus assembly protein ComGB	Machinery gene
NCDO2118_RS11635 (NCDO2118_2231)	comGA	2369926..2370864 (-)	939	WP_012898624.1	competence type IV pilus ATPase ComGA	Machinery gene
NCDO2118_RS11640	-	2371134..2371316 (-)	183	WP_038603763.1	hypothetical protein	-
NCDO2118_RS11645 (NCDO2118_2232)	-	2371307..2372062 (-)	756	WP_012898625.1	hypothetical protein	-

Sequence

Protein

• Length: 143 a.a.
• Molecular weight: 16546.59 Da
• Isoelectric Point: 9.6891

>NTDB_id=126451 NCDO2118_RS11620 WP_012898621.1 2368171..2368602(-) (comGD) [Lactococcus lactis subsp. lactis NCDO 2118]
MIRIKMKNEILMTRAFTLLESLLVLLIISFITTLFSLEIIQTVHLFKGELFVLQFENFYKRSQEDAALLQKSESLVAKNQ
ELICEDRSITIPKEVAVKDFTVKFDDKGGNSSLQKLTIFLPYEKKFITYQLEIGSGKFKKKIS

Nucleotide

• Length: 432 bp

>NTDB_id=126451 NCDO2118_RS11620 WP_012898621.1 2368171..2368602(-) (comGD) [Lactococcus lactis subsp. lactis NCDO 2118]
ATGATCAGAATAAAAATGAAGAACGAAATTTTAATGACTAGAGCATTTACTTTACTAGAGTCTCTTCTAGTTTTGTTGAT
TATTTCTTTTATCACAACTCTTTTTTCTTTAGAAATAATACAAACAGTCCATCTTTTTAAGGGAGAACTGTTTGTTCTCC
AGTTTGAAAATTTCTATAAAAGGAGTCAAGAAGATGCTGCACTGCTTCAAAAATCTGAAAGTTTAGTTGCTAAAAATCAA
GAATTAATCTGTGAAGATAGAAGTATCACAATTCCAAAGGAGGTAGCAGTTAAAGATTTTACAGTTAAATTTGATGATAA
GGGAGGGAATTCTAGCTTACAAAAACTCACAATTTTTTTACCTTACGAAAAAAAGTTCATCACTTATCAATTGGAGATAG
GCAGTGGAAAATTTAAAAAGAAAATCAGTTAA

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGD	Lactococcus lactis subsp. cremoris KW2	67.133	100	0.671
comYD	Streptococcus gordonii str. Challis substr. CH1	39.007	98.601	0.385
comYD	Streptococcus mutans UA140	40.625	89.51	0.364
comYD	Streptococcus mutans UA159	40.625	89.51	0.364