Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   B723_RS05330 Genome accession   NZ_CP010945
Coordinates   1161127..1162227 (+) Length   366 a.a.
NCBI ID   WP_017341725.1    Uniprot ID   -
Organism   Pseudomonas fluorescens NCIMB 11764     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1156127..1167227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B723_RS05310 (B723_05325) rsmB 1157019..1158329 (-) 1311 WP_017341721.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  B723_RS05315 (B723_05330) fmt 1158326..1159285 (-) 960 WP_017341722.1 methionyl-tRNA formyltransferase -
  B723_RS05320 (B723_05335) def 1159343..1159849 (-) 507 WP_017341723.1 peptide deformylase -
  B723_RS05325 (B723_05340) tsaP 1160021..1161046 (+) 1026 WP_017341724.1 LysM domain-containing protein Machinery gene
  B723_RS05330 (B723_05345) dprA 1161127..1162227 (+) 1101 WP_017341725.1 DNA-processing protein DprA Machinery gene
  B723_RS05335 (B723_05350) - 1162282..1162839 (+) 558 WP_017341726.1 L-threonylcarbamoyladenylate synthase -
  B723_RS05340 (B723_05355) - 1162952..1163929 (-) 978 WP_017341727.1 NADPH:quinone reductase -
  B723_RS05345 (B723_05360) hemF 1164108..1165022 (+) 915 WP_008155665.1 oxygen-dependent coproporphyrinogen oxidase -
  B723_RS05350 (B723_05365) aroE 1165036..1165857 (+) 822 WP_017341728.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 38663.37 Da        Isoelectric Point: 7.2514

>NTDB_id=125441 B723_RS05330 WP_017341725.1 1161127..1162227(+) (dprA) [Pseudomonas fluorescens NCIMB 11764]
MSLSALTPVSPAELEARLRLHRLPELGPARFKKLLEAFGSASKAISAPASAWRALGLPFACSEARRSSEIRDGASHALAW
LERPGQHLLMWDQPDYPALLAEISDAPPLLFVAGDPGILEKPQLAMVGSRRASRPGMDTAAAFSRSLASAGFVITSGLAL
GIDAAAHQAALDVGGRTVGVLGTGLEKFYPQRNRRLADAMIASGSAVLSEFPLDAGPTASNFPRRNRIISGLSLGVLVVE
ASVASGSLITARLAAEQGREVYAIPGSIHHPGARGCHQLIRDGAVLVETIEHILEGLRGWQQLPLSTETPSVTHPLLMLL
HAAPQTSEALADSSGWTLPKVLAALTELEMDGRAVCESGRWFARVS

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=125441 B723_RS05330 WP_017341725.1 1161127..1162227(+) (dprA) [Pseudomonas fluorescens NCIMB 11764]
ATGTCGCTGTCTGCTTTAACACCGGTTTCGCCTGCGGAACTGGAAGCTCGTTTACGCCTGCATCGTTTGCCGGAACTCGG
CCCTGCGCGTTTCAAGAAATTGCTTGAAGCCTTTGGCTCGGCGTCCAAAGCCATCAGCGCGCCGGCCAGTGCCTGGCGTG
CATTGGGTTTGCCGTTTGCGTGTTCAGAGGCCAGGCGCTCGAGCGAAATTCGCGATGGCGCAAGCCACGCATTGGCCTGG
CTAGAGCGTCCGGGCCAGCATTTACTGATGTGGGACCAGCCTGACTACCCGGCATTGCTGGCGGAAATCAGCGACGCACC
GCCGCTGTTATTCGTGGCGGGCGATCCGGGGATTCTGGAAAAGCCACAACTGGCGATGGTCGGCAGTCGTCGCGCCTCGC
GACCGGGCATGGACACCGCTGCGGCGTTTTCCCGGAGTCTGGCCAGCGCCGGTTTTGTCATCACCAGCGGTCTGGCGCTG
GGCATCGATGCCGCCGCGCACCAGGCCGCTCTGGACGTGGGCGGGCGAACGGTCGGTGTACTTGGCACGGGACTTGAAAA
GTTTTATCCACAGCGCAATCGGAGACTGGCGGACGCCATGATTGCGTCGGGCAGTGCGGTGCTTTCCGAGTTCCCGCTGG
ACGCAGGGCCCACCGCCAGCAACTTTCCCCGGCGCAACCGGATCATCAGCGGTTTGTCCCTCGGCGTGCTGGTGGTGGAG
GCCAGTGTCGCCAGTGGTTCATTGATCACCGCGCGGCTGGCGGCGGAGCAAGGTCGTGAGGTGTATGCCATTCCGGGGTC
GATTCACCATCCCGGTGCCCGTGGCTGTCATCAGCTGATCCGTGACGGTGCGGTATTGGTGGAAACCATCGAGCATATCC
TCGAAGGCTTGCGCGGCTGGCAACAGTTGCCGTTGTCCACCGAGACGCCATCGGTGACTCATCCACTGCTGATGCTGTTG
CATGCGGCGCCGCAGACCAGTGAAGCGTTGGCAGACAGCAGCGGCTGGACCCTGCCCAAAGTGCTGGCGGCGTTGACGGA
GCTGGAAATGGACGGCCGGGCAGTCTGCGAAAGCGGACGCTGGTTTGCGCGGGTGAGCTAG

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(81-288)

DprA winged helix domain (WHD_DprA)

(309-359)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

41.351

100

0.418
  dprA Acinetobacter baylyi ADP1

41.408

96.995

0.402
  dprA Legionella pneumophila strain ERS1305867

41.011

97.268

0.399
  dprA Acinetobacter baumannii D1279779

39.266

96.721

0.38
  dprA Acinetobacter baumannii strain A118

39.266

96.721

0.38
  dprA Neisseria gonorrhoeae strain FA1090

43.218

86.612

0.374
  dprA Neisseria meningitidis MC58

47.059

78.962

0.372
  dprA Neisseria meningitidis strain C311

47.059

78.962

0.372
  dprA Neisseria gonorrhoeae MS11

42.902

86.612

0.372
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.636

96.175

0.372
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

44.079

83.06

0.366
  dprA Vibrio cholerae strain A1552

44.079

83.06

0.366

Multiple sequence alignment