Detailed information NTG0125440

Bioinformatically predicted

Overview

• Name: tsaP
• Type: Machinery gene
• Locus tag: B723_RS05325
• Genome accession: NZ_CP010945
• Coordinates: 1160021..1161046 (+)
• Length: 341 a.a.
• NCBI ID: WP_017341724.1
• Uniprot ID: -
• Organism: Pseudomonas fluorescens NCIMB 11764
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1155021..1166046

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
B723_RS05295 (B723_05310)	-	1155021..1155260 (+)	240	WP_008027574.1	PilZ domain-containing protein	-
B723_RS05300 (B723_05315)	-	1155261..1155575 (-)	315	WP_017341719.1	tetratricopeptide repeat protein	-
B723_RS05305 (B723_05320)	trkA	1155622..1156995 (-)	1374	WP_017341720.1	Trk system potassium transporter TrkA	-
B723_RS05310 (B723_05325)	rsmB	1157019..1158329 (-)	1311	WP_017341721.1	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	-
B723_RS05315 (B723_05330)	fmt	1158326..1159285 (-)	960	WP_017341722.1	methionyl-tRNA formyltransferase	-
B723_RS05320 (B723_05335)	def	1159343..1159849 (-)	507	WP_017341723.1	peptide deformylase	-
B723_RS05325 (B723_05340)	tsaP	1160021..1161046 (+)	1026	WP_017341724.1	LysM domain-containing protein	Machinery gene
B723_RS05330 (B723_05345)	dprA	1161127..1162227 (+)	1101	WP_017341725.1	DNA-processing protein DprA	Machinery gene
B723_RS05335 (B723_05350)	-	1162282..1162839 (+)	558	WP_017341726.1	L-threonylcarbamoyladenylate synthase	-
B723_RS05340 (B723_05355)	-	1162952..1163929 (-)	978	WP_017341727.1	NADPH:quinone reductase	-
B723_RS05345 (B723_05360)	hemF	1164108..1165022 (+)	915	WP_008155665.1	oxygen-dependent coproporphyrinogen oxidase	-
B723_RS05350 (B723_05365)	aroE	1165036..1165857 (+)	822	WP_017341728.1	shikimate dehydrogenase	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37434.73 Da
• Isoelectric Point: 6.0824

>NTDB_id=125440 B723_RS05325 WP_017341724.1 1160021..1161046(+) (tsaP) [Pseudomonas fluorescens NCIMB 11764]
MRKSLLALLLLASAGLAHGQVQLREGFPQQYTVVTGDTLWDISGKYLREPWKWPELWQANPQIQNPNLIYPGDVLSLVYV
NGQPRLTLNRGESRGTIKLSPRVRSSPVADAIPSIPLQAINSFLLSNRIVDKVEDFDKAPYIVAGDAERVLSGTGDRIFA
RGQFDPSQPVYGIFRQGKVYTDPDSKEFLGINADDIGGGEIVATEGDVATLALQRTTQEVRLGDRLFSTEERSINSTFMP
SAPTTDINGLIIDVPRGVTQIGAMDVVTLNKGQRDGLAEGNVLVVMKTGETVRDRITGQPLKIPDERAGLLMVFRTYDKL
SYGLVLNASRSLAVMDKVRNP

Nucleotide

• Length: 1026 bp

>NTDB_id=125440 B723_RS05325 WP_017341724.1 1160021..1161046(+) (tsaP) [Pseudomonas fluorescens NCIMB 11764]
ATGAGGAAATCACTACTCGCCTTGCTCCTTCTGGCCTCGGCCGGTTTGGCGCACGGGCAAGTGCAACTCAGGGAAGGTTT
TCCACAGCAATACACCGTTGTCACGGGTGACACACTTTGGGACATCTCCGGAAAATACCTCCGTGAGCCGTGGAAATGGC
CTGAGCTCTGGCAGGCCAATCCGCAGATCCAGAACCCCAATCTCATCTACCCCGGCGATGTACTGTCGCTGGTCTACGTC
AATGGCCAGCCGCGTCTGACGCTCAATCGCGGGGAATCCAGGGGCACTATCAAGCTCTCTCCACGGGTGCGCAGCTCGCC
GGTGGCGGATGCCATCCCGAGTATTCCGCTGCAAGCCATCAACAGCTTCCTGCTGAGTAACCGCATCGTCGACAAGGTGG
AGGATTTCGACAAGGCGCCTTATATCGTCGCGGGCGATGCCGAACGGGTGCTCAGCGGTACCGGTGACCGGATCTTCGCC
CGTGGCCAGTTCGACCCGAGCCAGCCGGTTTACGGCATCTTCCGCCAGGGCAAGGTCTACACCGACCCCGACAGTAAAGA
GTTCCTGGGGATCAACGCGGACGACATCGGGGGCGGCGAAATCGTGGCCACTGAGGGCGATGTCGCTACCCTCGCCCTGC
AGCGCACGACTCAGGAAGTACGTCTTGGCGACCGTTTGTTCAGCACTGAAGAACGATCCATCAACTCGACCTTCATGCCC
AGCGCGCCAACAACCGACATAAACGGGCTGATCATCGACGTGCCGCGCGGGGTTACTCAGATTGGCGCGATGGATGTTGT
CACGCTGAACAAGGGGCAGCGTGATGGCCTGGCCGAAGGCAACGTGCTGGTGGTGATGAAAACCGGCGAAACCGTGCGTG
ACCGGATCACCGGCCAGCCGCTGAAGATTCCTGATGAACGCGCCGGTTTGCTGATGGTTTTCCGTACCTACGACAAGCTC
AGCTACGGGCTGGTGCTCAACGCATCGCGCTCGTTGGCGGTGATGGACAAAGTGCGAAATCCGTAA

Domains

Predicted by InterProScan.

• LysM domain (LysM) (31-76)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
tsaP	Acinetobacter baumannii D1279779	34.153	100	0.367