Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DF16_RS19035 Genome accession   NZ_CP007607
Coordinates   3661134..3661466 (-) Length   110 a.a.
NCBI ID   WP_001082769.1    Uniprot ID   A0A9W5QHQ8
Organism   Bacillus thuringiensis serovar kurstaki str. YBT-1520     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3656134..3666466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DF16_RS19010 (DF16_orf03808) - 3656961..3657737 (-) 777 WP_000637451.1 class I SAM-dependent methyltransferase -
  DF16_RS19015 (DF16_orf03809) - 3657787..3658221 (-) 435 WP_000063706.1 BrxA/BrxB family bacilliredoxin -
  DF16_RS19020 (DF16_orf03810) - 3658305..3658688 (-) 384 WP_000634884.1 DCC1-like thiol-disulfide oxidoreductase family protein -
  DF16_RS19025 (DF16_orf03811) - 3658692..3659819 (-) 1128 WP_000692580.1 conserved virulence factor C family protein -
  DF16_RS19030 (DF16_orf03812) - 3660237..3660797 (+) 561 WP_000714949.1 AAA family ATPase -
  DF16_RS19035 (DF16_orf03813) ssbA 3661134..3661466 (-) 333 WP_001082769.1 single-stranded DNA-binding protein Machinery gene
  DF16_RS19040 (DF16_orf03814) - 3661807..3662898 (-) 1092 WP_001259000.1 hypothetical protein -
  DF16_RS34470 - 3663280..3664010 (+) 731 Protein_3698 transposase -
  DF16_RS19050 (DF16_orf03818) - 3664174..3664683 (-) 510 WP_001089284.1 hypothetical protein -
  DF16_RS19055 (DF16_orf03819) - 3664997..3665233 (+) 237 WP_000021280.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 110 a.a.        Molecular weight: 12610.39 Da        Isoelectric Point: 9.4344

>NTDB_id=121656 DF16_RS19035 WP_001082769.1 3661134..3661466(-) (ssbA) [Bacillus thuringiensis serovar kurstaki str. YBT-1520]
MNRVVLIGRLTKEPELYYTKQGVAYARICVAVNRGFRNSLGEQQVDFINCVVWRKSAENVAEYCKKGSLVGITGRIQTSN
YDDEQGKRIYRTEVVIESITFLERRREGAS

Nucleotide


Download         Length: 333 bp        

>NTDB_id=121656 DF16_RS19035 WP_001082769.1 3661134..3661466(-) (ssbA) [Bacillus thuringiensis serovar kurstaki str. YBT-1520]
TTGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAACAAGGCGTCGCTTATGCACG
AATATGTGTTGCGGTGAATAGAGGATTTCGAAATAGTTTAGGTGAACAACAAGTCGATTTTATTAATTGTGTCGTTTGGC
GCAAATCGGCTGAGAATGTAGCTGAATATTGTAAGAAGGGGTCGCTCGTTGGGATTACAGGGCGTATTCAGACTAGTAAT
TACGATGATGAACAAGGCAAGAGAATATATAGAACTGAAGTTGTGATTGAGAGTATTACCTTTTTGGAGAGAAGGCGGGA
GGGGGCATCGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.048

95.455

0.564
  ssb Latilactobacillus sakei subsp. sakei 23K

56.19

95.455

0.536
  ssbB Bacillus subtilis subsp. subtilis str. 168

51.351

100

0.518
  ssbB Lactococcus lactis subsp. cremoris KW2

45.714

95.455

0.436
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.519

98.182

0.427
  ssbA Streptococcus mutans UA159

40.741

98.182

0.4
  ssbB/cilA Streptococcus mitis NCTC 12261

40.741

98.182

0.4
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.741

98.182

0.4
  ssbB/cilA Streptococcus pneumoniae D39

39.815

98.182

0.391
  ssbB/cilA Streptococcus pneumoniae R6

39.815

98.182

0.391
  ssbB/cilA Streptococcus mitis SK321

39.815

98.182

0.391
  ssbB/cilA Streptococcus pneumoniae Rx1

39.815

98.182

0.391

Multiple sequence alignment