Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | ayp1020_RS04110 | Genome accession | NZ_CP007601 |
| Coordinates | 878927..879238 (-) | Length | 103 a.a. |
| NCBI ID | WP_029625707.1 | Uniprot ID | - |
| Organism | Staphylococcus capitis subsp. capitis strain AYP1020 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 873927..884238
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ayp1020_RS04080 (AYP1020_0834) | gcvPA | 874461..875807 (-) | 1347 | WP_037549230.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
| ayp1020_RS04085 (AYP1020_0835) | gcvT | 875826..876917 (-) | 1092 | WP_047796320.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| ayp1020_RS04090 (AYP1020_0836) | - | 877126..877635 (-) | 510 | WP_029625706.1 | shikimate kinase | - |
| ayp1020_RS04095 (AYP1020_0837) | comGF | 877805..878296 (-) | 492 | WP_037560565.1 | competence type IV pilus minor pilin ComGF | - |
| ayp1020_RS04100 (AYP1020_0838) | - | 878214..878513 (-) | 300 | WP_002433765.1 | hypothetical protein | - |
| ayp1020_RS04105 (AYP1020_0839) | comGD | 878500..878898 (-) | 399 | WP_306460816.1 | competence type IV pilus minor pilin ComGD | - |
| ayp1020_RS04110 (AYP1020_0840) | comGC | 878927..879238 (-) | 312 | WP_029625707.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| ayp1020_RS04115 (AYP1020_0841) | comGB | 879257..880324 (-) | 1068 | WP_047796321.1 | competence type IV pilus assembly protein ComGB | - |
| ayp1020_RS04120 (AYP1020_0842) | comGA | 880296..881270 (-) | 975 | WP_047796322.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| ayp1020_RS04125 (AYP1020_0843) | - | 881328..881951 (-) | 624 | WP_047796323.1 | MBL fold metallo-hydrolase | - |
| ayp1020_RS04130 (AYP1020_0844) | - | 881951..882277 (-) | 327 | WP_002433945.1 | MTH1187 family thiamine-binding protein | - |
| ayp1020_RS04135 (AYP1020_0845) | - | 882277..883263 (-) | 987 | WP_002433633.1 | ROK family glucokinase | - |
| ayp1020_RS04140 (AYP1020_0846) | - | 883260..883463 (-) | 204 | WP_002433937.1 | YqgQ family protein | - |
Sequence
Protein
Download Length: 103 a.a. Molecular weight: 11345.43 Da Isoelectric Point: 9.7122
>NTDB_id=121509 ayp1020_RS04110 WP_029625707.1 878927..879238(-) (comGC) [Staphylococcus capitis subsp. capitis strain AYP1020]
MLKKLKKSKAFTLIEMLLVLLIISLLLILIIPNIAKQTAHIQSTGCDAQVKMVNSQIEAYTLKHNRNPNNIEELIAEGFI
KEGQKNCKSGQTISISNGEAVAN
MLKKLKKSKAFTLIEMLLVLLIISLLLILIIPNIAKQTAHIQSTGCDAQVKMVNSQIEAYTLKHNRNPNNIEELIAEGFI
KEGQKNCKSGQTISISNGEAVAN
Nucleotide
Download Length: 312 bp
>NTDB_id=121509 ayp1020_RS04110 WP_029625707.1 878927..879238(-) (comGC) [Staphylococcus capitis subsp. capitis strain AYP1020]
ATATTAAAAAAACTAAAAAAATCTAAAGCTTTCACTTTAATTGAAATGTTACTTGTTTTATTAATTATTAGTTTATTACT
TATTTTAATTATACCTAATATTGCCAAACAAACAGCACATATCCAATCTACTGGTTGTGATGCTCAAGTAAAAATGGTAA
ATAGTCAAATTGAAGCATATACATTAAAGCATAATCGTAACCCTAATAATATTGAAGAATTAATTGCTGAAGGTTTTATA
AAAGAAGGACAGAAAAATTGTAAATCCGGACAAACTATTAGTATTTCAAATGGTGAGGCTGTTGCGAACTAA
ATATTAAAAAAACTAAAAAAATCTAAAGCTTTCACTTTAATTGAAATGTTACTTGTTTTATTAATTATTAGTTTATTACT
TATTTTAATTATACCTAATATTGCCAAACAAACAGCACATATCCAATCTACTGGTTGTGATGCTCAAGTAAAAATGGTAA
ATAGTCAAATTGAAGCATATACATTAAAGCATAATCGTAACCCTAATAATATTGAAGAATTAATTGCTGAAGGTTTTATA
AAAGAAGGACAGAAAAATTGTAAATCCGGACAAACTATTAGTATTTCAAATGGTGAGGCTGTTGCGAACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Staphylococcus aureus N315 |
86.408 |
100 |
0.864 |
| comGC | Staphylococcus aureus MW2 |
86.408 |
100 |
0.864 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
45.631 |
100 |
0.456 |
| comGC/cglC | Streptococcus mitis SK321 |
45.098 |
99.029 |
0.447 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
44.118 |
99.029 |
0.437 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
44.118 |
99.029 |
0.437 |
| comGC/cglC | Streptococcus pneumoniae D39 |
44.118 |
99.029 |
0.437 |
| comGC/cglC | Streptococcus pneumoniae R6 |
44.118 |
99.029 |
0.437 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
48.837 |
83.495 |
0.408 |
| comYC | Streptococcus mutans UA159 |
46.591 |
85.437 |
0.398 |
| comYC | Streptococcus mutans UA140 |
46.591 |
85.437 |
0.398 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
50.633 |
76.699 |
0.388 |
| comYC | Streptococcus suis isolate S10 |
50 |
75.728 |
0.379 |
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
41.758 |
88.35 |
0.369 |