Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | ayp1020_RS04120 | Genome accession | NZ_CP007601 |
| Coordinates | 880296..881270 (-) | Length | 324 a.a. |
| NCBI ID | WP_047796322.1 | Uniprot ID | - |
| Organism | Staphylococcus capitis subsp. capitis strain AYP1020 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 875296..886270
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ayp1020_RS04085 (AYP1020_0835) | gcvT | 875826..876917 (-) | 1092 | WP_047796320.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| ayp1020_RS04090 (AYP1020_0836) | - | 877126..877635 (-) | 510 | WP_029625706.1 | shikimate kinase | - |
| ayp1020_RS04095 (AYP1020_0837) | comGF | 877805..878296 (-) | 492 | WP_037560565.1 | competence type IV pilus minor pilin ComGF | - |
| ayp1020_RS04100 (AYP1020_0838) | - | 878214..878513 (-) | 300 | WP_002433765.1 | hypothetical protein | - |
| ayp1020_RS04105 (AYP1020_0839) | comGD | 878500..878898 (-) | 399 | WP_306460816.1 | competence type IV pilus minor pilin ComGD | - |
| ayp1020_RS04110 (AYP1020_0840) | comGC | 878927..879238 (-) | 312 | WP_029625707.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| ayp1020_RS04115 (AYP1020_0841) | comGB | 879257..880324 (-) | 1068 | WP_047796321.1 | competence type IV pilus assembly protein ComGB | - |
| ayp1020_RS04120 (AYP1020_0842) | comGA | 880296..881270 (-) | 975 | WP_047796322.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| ayp1020_RS04125 (AYP1020_0843) | - | 881328..881951 (-) | 624 | WP_047796323.1 | MBL fold metallo-hydrolase | - |
| ayp1020_RS04130 (AYP1020_0844) | - | 881951..882277 (-) | 327 | WP_002433945.1 | MTH1187 family thiamine-binding protein | - |
| ayp1020_RS04135 (AYP1020_0845) | - | 882277..883263 (-) | 987 | WP_002433633.1 | ROK family glucokinase | - |
| ayp1020_RS04140 (AYP1020_0846) | - | 883260..883463 (-) | 204 | WP_002433937.1 | YqgQ family protein | - |
| ayp1020_RS04145 (AYP1020_0847) | - | 883444..884907 (-) | 1464 | WP_047796324.1 | rhomboid family intramembrane serine protease | - |
| ayp1020_RS04150 (AYP1020_0848) | - | 884908..885459 (-) | 552 | WP_029625710.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| ayp1020_RS04155 (AYP1020_0849) | rpmG | 885610..885759 (-) | 150 | WP_002433802.1 | 50S ribosomal protein L33 | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 37052.85 Da Isoelectric Point: 7.6989
>NTDB_id=121510 ayp1020_RS04120 WP_047796322.1 880296..881270(-) (comGA) [Staphylococcus capitis subsp. capitis strain AYP1020]
MKMLFQEIVNYAIKHAASDIHFIPTEHHTLIKLRINDQLINYDTLAHAIYKKLLVYMKFKSGLDVSTQQLAQSGRYTYKF
QNMYYLRISTLPLSLGNESCVIRIVPQYFQQRRDSYEFKDFKHLMNKKQGLLLCSGPTGSGKSTLMYQMVMHAHQNLNLN
VISIEDPVEQLLDGITQISVNEKAGINYTNSFKAILRCDPDVILIGEIRDAYIAKCVIQASLSGHLVLTTLHANDCKGAL
LRLLEMGVTVQELCQSINLISNQRLITTQTNTRELVCEVMNQNQVEYFFEHNHELPNSFTKLATHLTNLSKEGVICEEVV
NKYT
MKMLFQEIVNYAIKHAASDIHFIPTEHHTLIKLRINDQLINYDTLAHAIYKKLLVYMKFKSGLDVSTQQLAQSGRYTYKF
QNMYYLRISTLPLSLGNESCVIRIVPQYFQQRRDSYEFKDFKHLMNKKQGLLLCSGPTGSGKSTLMYQMVMHAHQNLNLN
VISIEDPVEQLLDGITQISVNEKAGINYTNSFKAILRCDPDVILIGEIRDAYIAKCVIQASLSGHLVLTTLHANDCKGAL
LRLLEMGVTVQELCQSINLISNQRLITTQTNTRELVCEVMNQNQVEYFFEHNHELPNSFTKLATHLTNLSKEGVICEEVV
NKYT
Nucleotide
Download Length: 975 bp
>NTDB_id=121510 ayp1020_RS04120 WP_047796322.1 880296..881270(-) (comGA) [Staphylococcus capitis subsp. capitis strain AYP1020]
ATGAAAATGTTATTCCAAGAGATAGTTAATTATGCTATAAAGCACGCTGCAAGTGATATACATTTTATTCCTACTGAGCA
CCATACTTTAATTAAACTAAGAATCAACGATCAACTTATTAATTACGATACACTGGCACATGCTATTTACAAAAAGTTAC
TTGTTTATATGAAGTTCAAATCAGGCTTAGATGTTTCGACCCAACAGCTTGCCCAAAGCGGAAGATATACTTATAAATTT
CAAAATATGTATTACTTAAGAATCTCTACGCTACCTTTATCTTTAGGTAATGAAAGTTGCGTTATAAGAATCGTACCTCA
ATATTTCCAACAAAGACGTGACTCATATGAATTTAAAGATTTTAAGCACTTAATGAATAAAAAACAAGGATTATTACTTT
GTAGTGGTCCAACTGGCTCTGGGAAAAGCACTTTAATGTATCAAATGGTAATGCATGCCCATCAAAATTTAAATTTAAAT
GTTATTTCAATTGAGGATCCTGTTGAGCAATTATTAGATGGGATAACTCAAATTTCAGTTAATGAAAAGGCCGGGATAAA
TTATACTAACTCTTTTAAAGCCATACTTAGATGTGACCCTGATGTCATTTTGATTGGAGAAATTCGTGATGCTTATATTG
CTAAATGTGTTATACAAGCAAGTCTAAGTGGTCATTTAGTGCTTACAACTTTACATGCTAATGATTGTAAAGGGGCTTTA
CTTCGTCTACTAGAAATGGGTGTAACAGTGCAAGAATTATGTCAATCTATAAATTTAATATCTAATCAAAGACTTATCAC
CACACAAACTAATACGCGTGAATTAGTTTGTGAAGTAATGAACCAAAATCAAGTAGAATACTTTTTTGAACACAATCATG
AACTACCAAATAGCTTCACTAAGCTGGCTACACATCTAACTAATCTATCTAAGGAAGGGGTAATTTGTGAAGAGGTTGTT
AATAAGTATACTTAA
ATGAAAATGTTATTCCAAGAGATAGTTAATTATGCTATAAAGCACGCTGCAAGTGATATACATTTTATTCCTACTGAGCA
CCATACTTTAATTAAACTAAGAATCAACGATCAACTTATTAATTACGATACACTGGCACATGCTATTTACAAAAAGTTAC
TTGTTTATATGAAGTTCAAATCAGGCTTAGATGTTTCGACCCAACAGCTTGCCCAAAGCGGAAGATATACTTATAAATTT
CAAAATATGTATTACTTAAGAATCTCTACGCTACCTTTATCTTTAGGTAATGAAAGTTGCGTTATAAGAATCGTACCTCA
ATATTTCCAACAAAGACGTGACTCATATGAATTTAAAGATTTTAAGCACTTAATGAATAAAAAACAAGGATTATTACTTT
GTAGTGGTCCAACTGGCTCTGGGAAAAGCACTTTAATGTATCAAATGGTAATGCATGCCCATCAAAATTTAAATTTAAAT
GTTATTTCAATTGAGGATCCTGTTGAGCAATTATTAGATGGGATAACTCAAATTTCAGTTAATGAAAAGGCCGGGATAAA
TTATACTAACTCTTTTAAAGCCATACTTAGATGTGACCCTGATGTCATTTTGATTGGAGAAATTCGTGATGCTTATATTG
CTAAATGTGTTATACAAGCAAGTCTAAGTGGTCATTTAGTGCTTACAACTTTACATGCTAATGATTGTAAAGGGGCTTTA
CTTCGTCTACTAGAAATGGGTGTAACAGTGCAAGAATTATGTCAATCTATAAATTTAATATCTAATCAAAGACTTATCAC
CACACAAACTAATACGCGTGAATTAGTTTGTGAAGTAATGAACCAAAATCAAGTAGAATACTTTTTTGAACACAATCATG
AACTACCAAATAGCTTCACTAAGCTGGCTACACATCTAACTAATCTATCTAAGGAAGGGGTAATTTGTGAAGAGGTTGTT
AATAAGTATACTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
70.588 |
99.691 |
0.704 |
| comGA | Staphylococcus aureus N315 |
70.588 |
99.691 |
0.704 |