Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   DK43_RS08750 Genome accession   NZ_CP007573
Coordinates   1815360..1815755 (-) Length   131 a.a.
NCBI ID   WP_003028522.1    Uniprot ID   A0AAI9NIC2
Organism   Streptococcus anginosus strain SA1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1810360..1820755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK43_RS08730 (DK43_08945) - 1810809..1812095 (-) 1287 WP_037593416.1 extracellular solute-binding protein -
  DK43_RS08735 (DK43_08950) - 1812092..1812775 (-) 684 WP_003028525.1 response regulator transcription factor -
  DK43_RS08740 (DK43_08955) - 1812768..1814081 (-) 1314 WP_003028524.1 sensor histidine kinase -
  DK43_RS08745 (DK43_08960) - 1814081..1815067 (-) 987 WP_003028523.1 sugar ABC transporter substrate-binding protein -
  DK43_RS08750 (DK43_08965) ssbB/cilA 1815360..1815755 (-) 396 WP_003028522.1 single-stranded DNA-binding protein Machinery gene
  DK43_RS08755 (DK43_08970) ytpR 1815836..1816462 (-) 627 WP_003028521.1 YtpR family tRNA-binding protein -
  DK43_RS08760 (DK43_08975) - 1816479..1816796 (-) 318 WP_003028520.1 thioredoxin family protein -
  DK43_RS08765 (DK43_08980) - 1816793..1817080 (-) 288 WP_041331913.1 DUF4651 domain-containing protein -
  DK43_RS08770 (DK43_08985) pepA 1817200..1818264 (+) 1065 WP_022525279.1 glutamyl aminopeptidase -
  DK43_RS08775 (DK43_08990) - 1818327..1818887 (-) 561 WP_022525280.1 folate family ECF transporter S component -
  DK43_RS08780 (DK43_08995) - 1819065..1820369 (-) 1305 WP_022525281.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14671.59 Da        Isoelectric Point: 5.9381

>NTDB_id=121232 DK43_RS08750 WP_003028522.1 1815360..1815755(-) (ssbB/cilA) [Streptococcus anginosus strain SA1]
MYNKVILIGRLVNTPELNKTANDKSVARATLAVNRRYKGQNGEREADFVNVVVWGKLAETLASYASKGSLISLDGELRTR
RYEKDGVTHYVTEVLCNGFQLLESRAQRALRENNAGADLADLLLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=121232 DK43_RS08750 WP_003028522.1 1815360..1815755(-) (ssbB/cilA) [Streptococcus anginosus strain SA1]
ATGTATAATAAAGTAATTTTAATCGGTCGCTTGGTGAATACACCAGAGTTAAACAAAACAGCTAATGATAAATCTGTGGC
GCGTGCAACACTTGCGGTCAATCGTCGCTACAAAGGACAAAATGGTGAACGAGAAGCAGACTTCGTCAATGTCGTTGTTT
GGGGCAAGTTAGCCGAAACATTGGCAAGTTATGCAAGTAAAGGCAGCTTGATTTCACTAGACGGCGAACTTCGCACTCGC
CGCTATGAGAAGGACGGAGTGACGCATTATGTCACAGAAGTGCTTTGCAATGGTTTCCAGCTATTAGAAAGCCGTGCACA
GCGAGCTCTTCGTGAGAATAATGCAGGTGCAGACTTGGCAGATTTGCTTCTGGAAGAAGAGGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae TIGR4

83.969

100

0.84
  ssbB/cilA Streptococcus mitis NCTC 12261

83.206

100

0.832
  ssbB/cilA Streptococcus pneumoniae Rx1

83.206

100

0.832
  ssbB/cilA Streptococcus pneumoniae D39

83.206

100

0.832
  ssbB/cilA Streptococcus pneumoniae R6

83.206

100

0.832
  ssbB/cilA Streptococcus mitis SK321

83.206

100

0.832
  ssbA Streptococcus mutans UA159

80.153

100

0.802
  ssbB Streptococcus sobrinus strain NIDR 6715-7

75.573

100

0.756
  ssbB Lactococcus lactis subsp. cremoris KW2

61.607

85.496

0.527
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

80.916

0.405
  ssb Latilactobacillus sakei subsp. sakei 23K

46.018

86.26

0.397
  ssbB Bacillus subtilis subsp. subtilis str. 168

45.37

82.443

0.374

Multiple sequence alignment