Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   ACLV7H_RS02230 Genome accession   NZ_OZ217340
Coordinates   411975..412370 (+) Length   131 a.a.
NCBI ID   WP_045591772.1    Uniprot ID   -
Organism   Streptococcus oralis isolate S. oralis A22     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 406975..417370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7H_RS02200 (SORA22_04350) rpoE 407136..407726 (+) 591 WP_411866236.1 DNA-directed RNA polymerase subunit delta -
  ACLV7H_RS02205 (SORA22_04360) - 408058..409665 (+) 1608 WP_049485009.1 CTP synthase -
  ACLV7H_RS02210 (SORA22_04370) - 409840..410139 (+) 300 WP_045591780.1 DUF4651 domain-containing protein -
  ACLV7H_RS02215 (SORA22_04380) - 410136..410453 (+) 318 WP_045591779.1 thioredoxin family protein -
  ACLV7H_RS02220 (SORA22_04390) ytpR 410469..411095 (+) 627 WP_049485008.1 YtpR family tRNA-binding protein -
  ACLV7H_RS02225 (SORA22_04400) - 411137..411898 (+) 762 WP_045591774.1 SDR family NAD(P)-dependent oxidoreductase -
  ACLV7H_RS02230 (SORA22_04410) ssbB/cilA 411975..412370 (+) 396 WP_045591772.1 single-stranded DNA-binding protein Machinery gene
  ACLV7H_RS02235 (SORA22_04420) groES 412527..412811 (+) 285 WP_411866237.1 co-chaperone GroES -
  ACLV7H_RS02240 (SORA22_04430) groL 412827..414449 (+) 1623 WP_411866238.1 chaperonin GroEL -
  ACLV7H_RS02245 (SORA22_04440) - 414589..415356 (+) 768 WP_411866239.1 epoxyqueuosine reductase QueH -
  ACLV7H_RS02250 (SORA22_04450) - 415426..415959 (-) 534 WP_000775318.1 DUF402 domain-containing protein -
  ACLV7H_RS02255 (SORA22_04460) recX 416048..416824 (-) 777 WP_411866240.1 recombination regulator RecX -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14897.87 Da        Isoelectric Point: 5.9409

>NTDB_id=1169948 ACLV7H_RS02230 WP_045591772.1 411975..412370(+) (ssbB/cilA) [Streptococcus oralis isolate S. oralis A22]
MYNKVIMIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNLVLWGKMAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1169948 ACLV7H_RS02230 WP_045591772.1 411975..412370(+) (ssbB/cilA) [Streptococcus oralis isolate S. oralis A22]
ATGTATAATAAAGTTATCATGATTGGGCGTTTGACGTCTACGCCAGAATTGCACAAGACCAACAATGACAAGTCAGTAGC
GCGAGCAACTATCGCTGTGAACCGTCGTTACAAAGACCAAAATGGCGAACGCGAAGCTGACTTTGTCAATCTGGTTCTTT
GGGGAAAAATGGCTGAAACCTTGGCAAGCTACGCAACTAAAGGTAGTCTTATCTCTGTGGATGGAGAACTTCGTACCCGT
CGATTTGAGAAAAATGGCCAGATGAACTACGTGACCGAAGTTCTCGTGACAGGATTCCAACTCTTGGAAAGTCGTGCCCA
ACGTGCCATGCGTGAAAATAATGCAGGACAGGATTTGGCGGACTTGGTTTTGGAAGAGGAAGAATTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus mitis NCTC 12261

97.71

100

0.977
  ssbB/cilA Streptococcus pneumoniae Rx1

97.71

100

0.977
  ssbB/cilA Streptococcus pneumoniae D39

97.71

100

0.977
  ssbB/cilA Streptococcus pneumoniae R6

97.71

100

0.977
  ssbB/cilA Streptococcus pneumoniae TIGR4

96.947

100

0.969
  ssbB/cilA Streptococcus mitis SK321

96.183

100

0.962
  ssbA Streptococcus mutans UA159

73.282

100

0.733
  ssbB Streptococcus sobrinus strain NIDR 6715-7

70.229

100

0.702
  ssbB Lactococcus lactis subsp. cremoris KW2

60.714

85.496

0.519
  ssb Latilactobacillus sakei subsp. sakei 23K

47.788

86.26

0.412
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

80.916

0.405
  ssbB Bacillus subtilis subsp. subtilis str. 168

44.444

82.443

0.366

Multiple sequence alignment