Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AB5Y62_RS16540 Genome accession   NZ_OZ078860
Coordinates   3616374..3617486 (-) Length   370 a.a.
NCBI ID   WP_368084932.1    Uniprot ID   -
Organism   Vibrio splendidus isolate A06     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3611374..3622486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5Y62_RS16510 hemF 3611932..3612849 (-) 918 WP_061025234.1 oxygen-dependent coproporphyrinogen oxidase -
  AB5Y62_RS16515 - 3612869..3613426 (-) 558 WP_029223376.1 L-threonylcarbamoyladenylate synthase -
  AB5Y62_RS16520 purE 3613622..3614107 (+) 486 WP_102491186.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  AB5Y62_RS16525 - 3614113..3615243 (+) 1131 WP_368084931.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  AB5Y62_RS16530 - 3615312..3615881 (-) 570 WP_004735775.1 type I DNA topoisomerase -
  AB5Y62_RS16535 - 3615894..3616370 (-) 477 WP_004735774.1 DUF494 family protein -
  AB5Y62_RS16540 dprA 3616374..3617486 (-) 1113 WP_368084932.1 DNA-processing protein DprA Machinery gene
  AB5Y62_RS16545 - 3617483..3618574 (-) 1092 WP_368084933.1 LysM peptidoglycan-binding domain-containing protein -
  AB5Y62_RS16550 def 3618715..3619227 (+) 513 WP_004735769.1 peptide deformylase -
  AB5Y62_RS16555 fmt 3619266..3620231 (+) 966 WP_065608188.1 methionyl-tRNA formyltransferase -
  AB5Y62_RS16560 rsmB 3620351..3621631 (+) 1281 WP_017077320.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 40084.90 Da        Isoelectric Point: 6.8756

>NTDB_id=1166602 AB5Y62_RS16540 WP_368084932.1 3616374..3617486(-) (dprA) [Vibrio splendidus isolate A06]
MNELQLSAWLTLSFVPQLGGKRLSRLLSIDSPSNIVGYSSQQLQALGLSAKQIAYLREQAPREVEACLEWQARQPNHHII
TPNCSHYPKLLNETASAPSVLFVKGHVEKLIEPQIAMVGSRNASLEGLQTAKSFAKEFVQNGLIVTSGLALGIDGYAHDG
ALDKGGETFAVLGSGLDSIYPARHRNLADRICENGALISEFRPSAKPRPEHFPRRNRIISGLSLGTLVVEAAEKSGSLIT
ARYAMEQGREVFALPGSIHNPTSRGGNSLIKAGACLVQSAQDVLIEIKSLLDWSIDQQPSLFEPTPCMGENEQLPFPQLL
ANVGLEATPVDILAQRTHIPVHEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=1166602 AB5Y62_RS16540 WP_368084932.1 3616374..3617486(-) (dprA) [Vibrio splendidus isolate A06]
GTGAATGAGCTACAACTGAGCGCTTGGCTAACTCTAAGTTTTGTTCCGCAATTGGGTGGCAAGCGCCTTTCTCGACTGCT
GAGCATTGATTCCCCTTCGAATATTGTTGGTTACTCAAGTCAGCAACTGCAAGCGCTTGGTTTGTCTGCCAAGCAAATTG
CCTATCTAAGAGAGCAAGCCCCAAGAGAAGTGGAGGCTTGCCTAGAGTGGCAAGCAAGACAACCCAACCATCACATCATT
ACCCCGAATTGCTCGCATTATCCCAAACTGCTGAATGAGACCGCTTCCGCGCCAAGCGTGCTTTTCGTTAAAGGTCACGT
TGAAAAGCTGATTGAGCCTCAAATCGCTATGGTCGGCAGTCGCAATGCCAGTCTCGAAGGGTTGCAAACCGCGAAGTCCT
TCGCCAAAGAGTTTGTGCAAAACGGTTTGATTGTCACCAGTGGCTTAGCGCTCGGTATCGATGGCTATGCTCATGATGGT
GCTCTAGATAAAGGAGGGGAAACTTTTGCTGTATTGGGTTCTGGCTTGGATTCAATTTATCCTGCGCGACACAGAAATTT
AGCCGATAGGATCTGTGAAAATGGCGCATTGATTTCAGAGTTTCGCCCAAGTGCCAAACCACGACCTGAACATTTCCCTC
GCCGTAACCGTATTATAAGTGGGTTATCGCTCGGAACCTTGGTGGTTGAAGCGGCTGAGAAGAGTGGTTCTTTGATTACA
GCTCGCTATGCCATGGAGCAAGGCCGAGAGGTGTTTGCGCTTCCTGGCTCTATTCATAACCCAACCAGTCGAGGAGGTAA
TAGCTTAATTAAAGCTGGAGCATGCTTGGTACAGAGTGCACAAGATGTTCTGATTGAAATAAAGAGTCTGTTAGACTGGT
CTATCGATCAGCAACCCAGCTTGTTCGAACCTACGCCCTGTATGGGGGAAAATGAACAATTGCCATTTCCACAGCTGTTA
GCTAACGTAGGGTTAGAGGCGACACCCGTTGATATTTTGGCACAGAGAACCCATATACCTGTGCATGAGGTCATGATGCA
GCTTTTAGAGCTTGAGCTCTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGAAAGGGGAGAGGCTAA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(318-363)

DNA recombination-mediator protein A (DNA_processg_A)

(74-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

68.293

99.73

0.681
  dprA Vibrio cholerae strain A1552

58.021

100

0.586
  dprA Glaesserella parasuis strain SC1401

47.581

100

0.478
  dprA Neisseria meningitidis MC58

39.043

100

0.419
  dprA Neisseria meningitidis strain C311

39.043

100

0.419
  dprA Legionella pneumophila strain ERS1305867

46.037

88.649

0.408
  dprA Neisseria gonorrhoeae strain FA1090

37.975

100

0.405
  dprA Neisseria gonorrhoeae MS11

37.975

100

0.405
  dprA Haemophilus influenzae Rd KW20

43.732

92.703

0.405
  dprA Acinetobacter baumannii D1279779

41.108

92.703

0.381
  dprA Acinetobacter baumannii strain A118

41.718

88.108

0.368
  dprA Acinetobacter baylyi ADP1

40

90.541

0.362

Multiple sequence alignment