Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   AB3Y84_RS09360 Genome accession   NZ_OZ061291
Coordinates   1898330..1898770 (-) Length   146 a.a.
NCBI ID   WP_367293949.1    Uniprot ID   -
Organism   Lactococcus lactis isolate Lactococcus lactis CIRM-BIA2553     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1893330..1903770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Y84_RS09335 atpF 1893399..1893905 (-) 507 WP_010906128.1 F0F1 ATP synthase subunit B -
  AB3Y84_RS09340 atpB 1893920..1894633 (-) 714 WP_004255255.1 F0F1 ATP synthase subunit A -
  AB3Y84_RS09345 - 1894678..1894893 (-) 216 WP_004255250.1 F0F1 ATP synthase subunit C -
  AB3Y84_RS09350 - 1895078..1895854 (-) 777 WP_098384084.1 alpha/beta hydrolase family protein -
  AB3Y84_RS09355 comEC 1896139..1898349 (-) 2211 WP_367293948.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AB3Y84_RS09360 comEA 1898330..1898770 (-) 441 WP_367293949.1 helix-hairpin-helix domain-containing protein Machinery gene
  AB3Y84_RS09365 comEA 1898758..1898904 (-) 147 WP_367293950.1 hypothetical protein Machinery gene
  AB3Y84_RS09370 - 1898964..1900325 (-) 1362 WP_029344292.1 ABC transporter permease -
  AB3Y84_RS09375 - 1900322..1901254 (-) 933 WP_004255238.1 ABC transporter ATP-binding protein -
  AB3Y84_RS09380 - 1901359..1901757 (-) 399 WP_004255236.1 hypothetical protein -
  AB3Y84_RS09385 - 1901861..1902424 (-) 564 WP_004255233.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16006.86 Da        Isoelectric Point: 4.4419

>NTDB_id=1165709 AB3Y84_RS09360 WP_367293949.1 1898330..1898770(-) (comEA) [Lactococcus lactis isolate Lactococcus lactis CIRM-BIA2553]
MVDLKGAVTKPNVYQISSDERLVDLIKEAGGFTDQADQKSINLSAKLKDEEVIYVPKIGENSSTENTDSSANSVTSQVST
TTEKININQADLTELQKLTGIGQKKAQDIIDFRTKNGDFKSLEDLGKVSGFGDKTLEKLKDELCFE

Nucleotide


Download         Length: 441 bp        

>NTDB_id=1165709 AB3Y84_RS09360 WP_367293949.1 1898330..1898770(-) (comEA) [Lactococcus lactis isolate Lactococcus lactis CIRM-BIA2553]
ATGGTTGATTTAAAAGGTGCGGTAACAAAGCCTAATGTCTATCAAATTTCGTCAGATGAACGTCTAGTTGATCTAATTAA
GGAAGCTGGTGGTTTTACTGACCAAGCTGACCAGAAATCAATTAATCTGTCAGCAAAATTAAAAGATGAAGAAGTAATTT
ATGTCCCAAAAATTGGTGAAAATTCAAGCACAGAAAATACTGACAGCTCTGCTAATTCGGTCACTAGTCAAGTCTCAACA
ACCACTGAAAAAATAAATATCAATCAAGCAGATTTGACTGAACTACAAAAATTAACAGGTATTGGTCAGAAAAAAGCTCA
AGACATCATCGATTTTCGGACGAAAAATGGTGATTTCAAATCACTTGAAGACTTGGGAAAAGTTTCTGGTTTTGGAGATA
AAACACTAGAAAAATTGAAAGATGAGTTGTGTTTTGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(82-143)

SLBB domain (SLBB)

(1-56)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Lactococcus lactis subsp. cremoris KW2

83.108

100

0.842
  comEA/celA/cilE Streptococcus mitis SK321

52.143

95.89

0.5
  comEA Latilactobacillus sakei subsp. sakei 23K

44.444

100

0.493
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

49.286

95.89

0.473
  comEA/celA/cilE Streptococcus pneumoniae R6

47.518

96.575

0.459
  comEA/celA/cilE Streptococcus pneumoniae Rx1

47.518

96.575

0.459
  comEA/celA/cilE Streptococcus pneumoniae D39

47.518

96.575

0.459
  comEA/celA/cilE Streptococcus mitis NCTC 12261

47.857

95.89

0.459
  comEA Streptococcus thermophilus LMD-9

45.833

98.63

0.452
  comEA Staphylococcus aureus N315

41.727

95.205

0.397
  comEA Staphylococcus aureus MW2

41.727

95.205

0.397
  comEA Bacillus subtilis subsp. subtilis str. 168

40

99.315

0.397

Multiple sequence alignment