Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | U9J37_RS06720 | Genome accession | NZ_OY808997 |
| Coordinates | 1526790..1527041 (-) | Length | 83 a.a. |
| NCBI ID | WP_005473354.1 | Uniprot ID | - |
| Organism | Vibrio sp. 16 isolate VDT1 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1521790..1532041
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| U9J37_RS06695 (VDT1_1360) | lapB | 1522089..1523258 (-) | 1170 | WP_038133998.1 | lipopolysaccharide assembly protein LapB | - |
| U9J37_RS06700 (VDT1_1361) | - | 1523284..1523565 (-) | 282 | WP_038191525.1 | LapA family protein | - |
| U9J37_RS06705 (VDT1_1362) | ihfB | 1523704..1523985 (-) | 282 | WP_011080796.1 | integration host factor subunit beta | - |
| U9J37_RS06710 | rpsA | 1524197..1525867 (-) | 1671 | WP_038133994.1 | 30S ribosomal protein S1 | - |
| U9J37_RS06715 (VDT1_1364) | cmk | 1525971..1526651 (-) | 681 | WP_038191526.1 | (d)CMP kinase | - |
| U9J37_RS06720 (VDT1_1365) | comEA | 1526790..1527041 (-) | 252 | WP_005473354.1 | ComEA family DNA-binding protein | Machinery gene |
| U9J37_RS06725 (VDT1_1366) | ppiD | 1527215..1529074 (-) | 1860 | WP_322414043.1 | peptidylprolyl isomerase | - |
| U9J37_RS06730 (VDT1_1367) | - | 1529246..1529518 (-) | 273 | WP_005473436.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 83 a.a. Molecular weight: 9078.32 Da Isoelectric Point: 4.5994
>NTDB_id=1161971 U9J37_RS06720 WP_005473354.1 1526790..1527041(-) (comEA) [Vibrio sp. 16 isolate VDT1]
MPQVALADQKVNPKYEGIEITVNVNQASAEELADLLTGIGMKKAQAIVDYREKHGDFESAESLVDVKGIGPALVDKNRER
IQL
MPQVALADQKVNPKYEGIEITVNVNQASAEELADLLTGIGMKKAQAIVDYREKHGDFESAESLVDVKGIGPALVDKNRER
IQL
Nucleotide
Download Length: 252 bp
>NTDB_id=1161971 U9J37_RS06720 WP_005473354.1 1526790..1527041(-) (comEA) [Vibrio sp. 16 isolate VDT1]
TTGCCACAAGTCGCGTTGGCAGATCAAAAAGTGAACCCAAAGTATGAGGGAATAGAAATTACGGTGAACGTGAACCAGGC
GAGCGCCGAGGAACTCGCAGATTTGCTTACCGGAATCGGAATGAAAAAAGCGCAAGCGATAGTCGACTATCGTGAAAAGC
ACGGAGATTTCGAGAGCGCTGAGTCGCTAGTGGATGTCAAGGGGATTGGTCCGGCACTGGTTGATAAAAATCGTGAGCGA
ATTCAATTATAA
TTGCCACAAGTCGCGTTGGCAGATCAAAAAGTGAACCCAAAGTATGAGGGAATAGAAATTACGGTGAACGTGAACCAGGC
GAGCGCCGAGGAACTCGCAGATTTGCTTACCGGAATCGGAATGAAAAAAGCGCAAGCGATAGTCGACTATCGTGAAAAGC
ACGGAGATTTCGAGAGCGCTGAGTCGCTAGTGGATGTCAAGGGGATTGGTCCGGCACTGGTTGATAAAAATCGTGAGCGA
ATTCAATTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
60.976 |
98.795 |
0.602 |
| comEA | Vibrio campbellii strain DS40M4 |
65.714 |
84.337 |
0.554 |
| comEA | Vibrio cholerae C6706 |
66.176 |
81.928 |
0.542 |
| comEA | Vibrio cholerae strain A1552 |
66.176 |
81.928 |
0.542 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
54.321 |
97.59 |
0.53 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
60 |
72.289 |
0.434 |
| comEA | Acinetobacter baylyi ADP1 |
50 |
79.518 |
0.398 |
| comEA | Acinetobacter baumannii D1279779 |
50 |
74.699 |
0.373 |
| comEA | Acinetobacter baumannii strain A118 |
48.387 |
74.699 |
0.361 |
| comEA | Lactococcus lactis subsp. cremoris KW2 |
48.387 |
74.699 |
0.361 |
| comEA | Legionella pneumophila str. Paris |
49.18 |
73.494 |
0.361 |
| comEA | Legionella pneumophila strain ERS1305867 |
49.18 |
73.494 |
0.361 |