Detailed information NTG0116107

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: MARPU_RS16140
• Genome accession: NZ_CP007031
• Coordinates: 3713949..3715109 (-)
• Length: 386 a.a.
• NCBI ID: WP_005224902.1
• Uniprot ID: -
• Organism: Marichromatium purpuratum 984
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3708949..3720109

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MARPU_RS16120 (MARPU_16435)	-	3709090..3709359 (-)	270	WP_005224898.1	transcriptional regulator	-
MARPU_RS16125 (MARPU_16440)	-	3709599..3710912 (-)	1314	WP_005224899.1	histone deacetylase	-
MARPU_RS16130 (MARPU_16445)	-	3710906..3712582 (-)	1677	WP_005224900.1	hydantoinase/oxoprolinase family protein	-
MARPU_RS16135 (MARPU_16450)	pilU	3712713..3713768 (-)	1056	WP_025275407.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
MARPU_RS16140 (MARPU_16455)	pilU	3713949..3715109 (-)	1161	WP_005224902.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
MARPU_RS16145 (MARPU_16460)	-	3715276..3716742 (-)	1467	WP_005224903.1	glutamate synthase subunit beta	-

Sequence

Protein

• Length: 386 a.a.
• Molecular weight: 43085.54 Da
• Isoelectric Point: 6.4303

>NTDB_id=116107 MARPU_RS16140 WP_005224902.1 3713949..3715109(-) (pilU) [Marichromatium purpuratum 984]
MDRQQAARFMLDCLRKMVAKKGSDLFITAGFPPACKIDGRLTPIGDQPLSAAQTNILVRSIMNDRQIRDYDMHKECNFAI
HPQDIGRFRVNAFVQQGKGGAVLRTINARIPTADELKLPPVLLDIVMAKRGMVLLVGGTGSGKSTSLAAMVGHRNQETHG
HIVTIEDPVEYVHPHGNCLITQREVGVDTESWEAALVNTLRQAPDVILIGEIRSRETMEHAINFAETGHLCLSTLHANSA
NQALDRIINLFPEERRAQLLMDLSLNLKAVISQRLLPCTDGGRIPAVEVMINSPLIQDLIFKGDVSGIKEVMKRSREQGM
QTFDMSLFDLYEARKISYEDALRNADSMNELRLMIKLQGQETRNKDHFEPVDGLSILDDEDSPPFR

Nucleotide

• Length: 1161 bp

>NTDB_id=116107 MARPU_RS16140 WP_005224902.1 3713949..3715109(-) (pilU) [Marichromatium purpuratum 984]
ATGGATCGCCAACAGGCCGCGCGTTTCATGCTCGACTGTCTGCGCAAGATGGTCGCCAAGAAGGGCTCCGACCTCTTCAT
CACCGCCGGCTTCCCCCCCGCCTGCAAGATCGACGGCCGTCTCACCCCGATCGGCGATCAGCCGCTGAGCGCGGCGCAGA
CCAACATCCTCGTGCGCTCGATCATGAACGATCGGCAGATCCGCGACTACGACATGCACAAGGAGTGCAACTTCGCGATC
CACCCCCAGGACATCGGCCGCTTCCGCGTCAACGCCTTCGTCCAGCAGGGCAAGGGCGGCGCGGTGCTGCGGACCATCAA
CGCTCGCATCCCCACCGCCGACGAACTCAAGCTGCCGCCGGTGCTGCTCGACATCGTCATGGCCAAGCGCGGCATGGTGC
TGCTGGTCGGCGGCACCGGTTCGGGCAAGTCGACCTCGCTGGCGGCGATGGTCGGGCATCGCAACCAGGAGACCCATGGT
CATATCGTCACCATCGAGGATCCGGTCGAGTACGTCCATCCCCACGGTAACTGTCTGATCACCCAGCGCGAGGTCGGGGT
CGACACCGAGAGCTGGGAGGCGGCGCTGGTCAATACCCTGCGCCAGGCCCCGGACGTCATCCTCATCGGCGAGATCCGCA
GTCGCGAGACCATGGAGCACGCCATCAACTTCGCCGAGACCGGCCATCTCTGTCTCTCGACGCTGCACGCCAACAGCGCC
AACCAGGCGCTCGATCGCATCATCAACCTCTTCCCCGAGGAGCGGCGCGCGCAGCTGCTGATGGATCTCTCGCTCAACCT
CAAGGCGGTGATCTCGCAGCGCCTGCTGCCCTGCACCGACGGTGGCCGCATCCCCGCCGTCGAGGTGATGATCAACTCGC
CGCTGATCCAGGACCTGATCTTCAAGGGCGACGTCAGTGGCATCAAGGAGGTGATGAAGCGCTCGCGCGAGCAGGGCATG
CAGACCTTCGACATGTCGCTGTTCGATCTCTACGAGGCGCGCAAGATCAGCTACGAGGACGCGCTGCGCAATGCCGACTC
GATGAACGAGCTGCGGCTGATGATCAAGCTGCAGGGGCAGGAGACGCGCAACAAGGATCATTTCGAGCCGGTCGACGGGC
TGTCCATCCTCGACGACGAGGACAGCCCGCCGTTTCGCTAG

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (120-275)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	58.602	96.373	0.565
pilU	Acinetobacter baylyi ADP1	55.556	93.264	0.518
pilU	Vibrio cholerae strain A1552	57.185	88.342	0.505
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	45.672	86.788	0.396
pilT	Pseudomonas aeruginosa PAK	43.293	84.974	0.368
pilT	Acinetobacter nosocomialis M2	43.519	83.938	0.365
pilT	Acinetobacter baumannii D1279779	43.519	83.938	0.365
pilT	Acinetobacter baumannii strain A118	43.519	83.938	0.365
pilT	Neisseria gonorrhoeae MS11	41.108	88.86	0.365
pilT	Neisseria meningitidis 8013	41.108	88.86	0.365