Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QOS47_RS02155 Genome accession   NZ_OX460909
Coordinates   435377..436597 (-) Length   406 a.a.
NCBI ID   WP_181315634.1    Uniprot ID   -
Organism   Photobacterium phosphoreum strain MIP2473 isolate MIP2473     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 430377..441597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOS47_RS02130 mutT 432303..432710 (-) 408 WP_283596999.1 8-oxo-dGTP diphosphatase MutT -
  QOS47_RS02135 yacG 432829..433029 (-) 201 WP_045028085.1 DNA gyrase inhibitor YacG -
  QOS47_RS02140 zapD 433037..433774 (-) 738 WP_065192136.1 cell division protein ZapD -
  QOS47_RS02145 coaE 433826..434431 (-) 606 WP_279133236.1 dephospho-CoA kinase -
  QOS47_RS02150 pilD 434435..435313 (-) 879 WP_283597006.1 A24 family peptidase Machinery gene
  QOS47_RS02155 pilC 435377..436597 (-) 1221 WP_181315634.1 type II secretion system F family protein Machinery gene
  QOS47_RS02160 pilB 436654..438339 (-) 1686 WP_283597010.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QOS47_RS02165 pilA 438339..438740 (-) 402 WP_283598058.1 pilin Machinery gene
  QOS47_RS02170 pilA 438743..439132 (-) 390 WP_283597013.1 pilin Machinery gene
  QOS47_RS02175 nadC 439479..440366 (-) 888 WP_065194571.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QOS47_RS02180 ampD 440595..441140 (+) 546 WP_283597015.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 45294.29 Da        Isoelectric Point: 9.5577

>NTDB_id=1158772 QOS47_RS02155 WP_181315634.1 435377..436597(-) (pilC) [Photobacterium phosphoreum strain MIP2473 isolate MIP2473]
MVAATKIRYYQWRGVNQAGRKVSGVTMGYQEQEVRLQLTEQMINIKKIKRTSPGTLSRLRNQMKPEDVTMVTRQLSTMVE
SGVPVVQALTLMANSHHKGEMRATLKQVTTQVEAGASLSKAMRSSSPLFDKFYCDLVDTGEQTGHLGEVFARIAIYREKA
EAMRKKIIKAMIYPSMVSITAVLVTVLMLVFVIPQFAAIFSGFGAELPWFTRQVMKASDFLVNYGTYLGGVIVMAVLLFR
YCYKNYYRFHYRVDKLSLKLPIVGGVLLKATISRFARTLATTFNAGIPLLTGIQSAAKTSNNLYIEQAIDEVYNNTAAGM
PLYLSLRQADVFPELMLQMVMIGEESGALDDMLNKMAQLYEDDVDNTVDNLGQILEPFIIIILGTIIGGLLVAMYMPIFT
LMSVIG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=1158772 QOS47_RS02155 WP_181315634.1 435377..436597(-) (pilC) [Photobacterium phosphoreum strain MIP2473 isolate MIP2473]
ATGGTTGCTGCCACTAAAATTCGTTACTACCAATGGCGTGGCGTCAATCAAGCCGGACGTAAAGTCTCTGGCGTCACCAT
GGGGTATCAAGAACAGGAAGTACGTCTTCAGCTCACCGAGCAAATGATCAATATTAAAAAGATCAAGCGTACTTCCCCTG
GAACATTAAGCCGCCTTCGCAACCAAATGAAGCCTGAAGATGTCACCATGGTCACCCGTCAATTATCAACCATGGTTGAA
TCAGGGGTGCCTGTAGTACAAGCCTTAACACTGATGGCGAACAGTCATCATAAAGGCGAAATGCGCGCCACTCTAAAACA
AGTTACTACCCAAGTCGAAGCAGGAGCATCACTGTCAAAAGCGATGCGTTCCAGTTCACCGTTGTTTGATAAATTCTATT
GCGACTTGGTCGATACGGGCGAACAAACAGGTCACTTAGGTGAAGTGTTTGCACGAATTGCCATTTACCGTGAAAAAGCG
GAAGCAATGCGCAAAAAGATCATCAAAGCGATGATCTACCCGTCAATGGTGTCGATCACCGCAGTATTAGTGACGGTATT
AATGCTGGTGTTTGTTATTCCCCAATTCGCGGCGATTTTTAGTGGTTTTGGCGCTGAACTGCCGTGGTTTACTCGCCAAG
TCATGAAAGCCTCGGACTTTCTGGTTAACTACGGCACTTATCTCGGTGGCGTCATTGTGATGGCAGTGTTGCTATTCCGC
TACTGTTATAAAAACTATTACCGCTTCCACTATCGCGTTGACAAACTGAGCCTAAAGTTACCCATCGTTGGTGGAGTATT
ACTTAAAGCCACTATTTCCCGTTTTGCACGAACGCTAGCAACCACTTTTAATGCGGGTATTCCGTTACTGACCGGTATTC
AATCGGCGGCAAAAACCAGTAATAACCTCTATATCGAACAAGCGATTGATGAAGTGTATAACAATACCGCAGCAGGAATG
CCATTATACTTATCCTTGCGTCAAGCTGATGTTTTTCCAGAATTAATGCTACAAATGGTAATGATTGGTGAAGAATCTGG
CGCACTTGATGATATGCTCAACAAAATGGCACAATTGTACGAAGATGATGTCGATAATACCGTCGATAACCTTGGTCAAA
TTTTAGAGCCGTTTATTATTATCATTCTTGGTACCATTATCGGTGGTTTATTAGTCGCGATGTACATGCCTATCTTTACG
CTCATGAGCGTTATAGGGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

54.75

98.522

0.539
  pilC Vibrio campbellii strain DS40M4

50.868

99.261

0.505
  pilC Pseudomonas stutzeri DSM 10701

40.05

99.015

0.397
  pilG Neisseria gonorrhoeae MS11

39.95

99.261

0.397
  pilG Neisseria meningitidis 44/76-A

39.851

99.507

0.397
  pilC Acinetobacter baylyi ADP1

39.798

97.783

0.389
  pilC Acinetobacter baumannii D1279779

39.043

97.783

0.382
  pilC Legionella pneumophila strain ERS1305867

37.879

97.537

0.369

Multiple sequence alignment