Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QOS47_RS02150 Genome accession   NZ_OX460909
Coordinates   434435..435313 (-) Length   292 a.a.
NCBI ID   WP_283597006.1    Uniprot ID   -
Organism   Photobacterium phosphoreum strain MIP2473 isolate MIP2473     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 429435..440313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOS47_RS02130 mutT 432303..432710 (-) 408 WP_283596999.1 8-oxo-dGTP diphosphatase MutT -
  QOS47_RS02135 yacG 432829..433029 (-) 201 WP_045028085.1 DNA gyrase inhibitor YacG -
  QOS47_RS02140 zapD 433037..433774 (-) 738 WP_065192136.1 cell division protein ZapD -
  QOS47_RS02145 coaE 433826..434431 (-) 606 WP_279133236.1 dephospho-CoA kinase -
  QOS47_RS02150 pilD 434435..435313 (-) 879 WP_283597006.1 A24 family peptidase Machinery gene
  QOS47_RS02155 pilC 435377..436597 (-) 1221 WP_181315634.1 type II secretion system F family protein Machinery gene
  QOS47_RS02160 pilB 436654..438339 (-) 1686 WP_283597010.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QOS47_RS02165 pilA 438339..438740 (-) 402 WP_283598058.1 pilin Machinery gene
  QOS47_RS02170 pilA 438743..439132 (-) 390 WP_283597013.1 pilin Machinery gene

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 32648.88 Da        Isoelectric Point: 7.5376

>NTDB_id=1158771 QOS47_RS02150 WP_283597006.1 434435..435313(-) (pilD) [Photobacterium phosphoreum strain MIP2473 isolate MIP2473]
MAVLSYYPWLYPLFATLFGLLIGSFLNVVIYRLPIMMERQWRQECHDCFPELDNPHRNDTDTPFNLSVPRSRCPHCNNAI
SALENIPVISWLVLKGKCRACQTPISKRYPAIELLTAIISLTVALVLPPTWWAVAVLGCSFALIALTFIDIDKMLLPDQI
TLPLMWGGILFALLGISPISLTDSIIGAMAGYLSLWSIFWAFKLLTKKDGMGYGDFKLLAAIGAWVGWSLLPFVVLLSSL
VGAICGIIMLRIKHQDQQTPFSFGPYLAVAGWIAMLWGQPILDWYVSSYLGF

Nucleotide


Download         Length: 879 bp        

>NTDB_id=1158771 QOS47_RS02150 WP_283597006.1 434435..435313(-) (pilD) [Photobacterium phosphoreum strain MIP2473 isolate MIP2473]
ATGGCTGTATTGAGTTATTACCCGTGGCTGTACCCGTTATTTGCAACCCTGTTTGGTTTATTGATCGGCAGCTTTCTTAA
TGTGGTGATTTATCGATTACCGATCATGATGGAGCGTCAATGGCGTCAAGAGTGCCATGATTGTTTTCCAGAGCTGGATA
ACCCGCACCGCAATGATACCGATACCCCCTTTAATTTAAGTGTACCCCGTTCGCGCTGCCCCCATTGCAATAATGCCATT
AGTGCGCTGGAAAACATTCCTGTCATTAGCTGGCTAGTGTTAAAAGGCAAATGTCGCGCGTGTCAGACCCCGATCAGTAA
ACGCTATCCTGCGATAGAATTACTCACCGCCATTATTAGCTTAACCGTCGCGTTAGTATTACCACCAACATGGTGGGCAG
TTGCCGTACTCGGCTGTAGCTTTGCATTGATCGCGCTAACCTTTATCGATATCGACAAAATGCTACTGCCCGATCAAATC
ACGCTGCCATTAATGTGGGGCGGTATTTTATTCGCTTTACTCGGCATCAGCCCTATTTCATTAACTGATTCCATTATTGG
CGCAATGGCAGGTTATTTATCGCTGTGGTCAATATTCTGGGCATTTAAACTGCTGACCAAAAAAGATGGCATGGGTTACG
GTGATTTTAAACTGTTAGCAGCTATTGGCGCTTGGGTTGGGTGGTCATTATTACCCTTCGTGGTGTTACTGTCGTCTCTT
GTCGGTGCGATCTGCGGCATTATCATGCTACGAATCAAGCATCAAGATCAACAAACCCCGTTCTCTTTTGGACCCTACCT
TGCTGTCGCTGGCTGGATTGCTATGCTATGGGGCCAACCCATTTTAGATTGGTATGTTAGTTCATATTTAGGATTTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(141-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio campbellii strain DS40M4

60.481

99.658

0.603
  pilD Vibrio cholerae strain A1552

59.794

99.658

0.596
  pilD Acinetobacter nosocomialis M2

52.33

95.548

0.5
  pilD Acinetobacter baumannii D1279779

52.33

95.548

0.5
  pilD Neisseria gonorrhoeae MS11

48.718

93.493

0.455

Multiple sequence alignment