Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   QOS47_RS02165 Genome accession   NZ_OX460909
Coordinates   438339..438740 (-) Length   133 a.a.
NCBI ID   WP_283598058.1    Uniprot ID   -
Organism   Photobacterium phosphoreum strain MIP2473 isolate MIP2473     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 433339..443740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOS47_RS02145 coaE 433826..434431 (-) 606 WP_279133236.1 dephospho-CoA kinase -
  QOS47_RS02150 pilD 434435..435313 (-) 879 WP_283597006.1 A24 family peptidase Machinery gene
  QOS47_RS02155 pilC 435377..436597 (-) 1221 WP_181315634.1 type II secretion system F family protein Machinery gene
  QOS47_RS02160 pilB 436654..438339 (-) 1686 WP_283597010.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QOS47_RS02165 pilA 438339..438740 (-) 402 WP_283598058.1 pilin Machinery gene
  QOS47_RS02170 pilA 438743..439132 (-) 390 WP_283597013.1 pilin Machinery gene
  QOS47_RS02175 nadC 439479..440366 (-) 888 WP_065194571.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QOS47_RS02180 ampD 440595..441140 (+) 546 WP_283597015.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  QOS47_RS02185 pdhR 441447..442220 (+) 774 WP_065192130.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 13966.01 Da        Isoelectric Point: 7.7811

>NTDB_id=1158774 QOS47_RS02165 WP_283598058.1 438339..438740(-) (pilA) [Photobacterium phosphoreum strain MIP2473 isolate MIP2473]
MKKQNGFTLIELMIVVAVIGVLSAIAVPQYQEYVKKAAVGTALASVSAYKTNIEDNIANVGNFPAVSAAFGIGKITATSA
AISTEGNKITAEILEGSAKNTKVQLLRKNDEWTCVQNSGLKITGCDENSSITN

Nucleotide


Download         Length: 402 bp        

>NTDB_id=1158774 QOS47_RS02165 WP_283598058.1 438339..438740(-) (pilA) [Photobacterium phosphoreum strain MIP2473 isolate MIP2473]
ATGAAAAAGCAAAACGGATTTACACTCATTGAATTAATGATTGTTGTTGCTGTAATTGGCGTACTCTCAGCAATTGCTGT
ACCTCAATATCAAGAATATGTAAAAAAAGCGGCTGTTGGTACGGCACTCGCTTCTGTATCAGCTTATAAAACAAATATTG
AAGATAACATTGCTAATGTCGGTAATTTCCCGGCTGTTTCAGCAGCTTTTGGTATAGGTAAGATAACCGCCACATCTGCT
GCTATAAGTACAGAAGGAAACAAAATAACCGCAGAAATTTTAGAAGGATCGGCTAAAAACACCAAAGTACAGCTACTAAG
AAAAAACGATGAATGGACATGCGTTCAAAATAGTGGCTTGAAGATTACAGGCTGCGATGAAAATAGCTCAATAACAAACT
AA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

46.575

100

0.511
  pilA Vibrio cholerae strain A1552

46.575

100

0.511
  pilA Vibrio cholerae C6706

46.575

100

0.511
  pilA Acinetobacter baumannii strain A118

42.857

100

0.429

Multiple sequence alignment