Detailed information
Bioinformatically predicted
Overview
| Name | pilB | Type | Machinery gene |
| Locus tag | QOS47_RS02160 | Genome accession | NZ_OX460909 |
| Coordinates | 436654..438339 (-) | Length | 561 a.a. |
| NCBI ID | WP_283597010.1 | Uniprot ID | - |
| Organism | Photobacterium phosphoreum strain MIP2473 isolate MIP2473 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 431654..443339
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QOS47_RS02130 | mutT | 432303..432710 (-) | 408 | WP_283596999.1 | 8-oxo-dGTP diphosphatase MutT | - |
| QOS47_RS02135 | yacG | 432829..433029 (-) | 201 | WP_045028085.1 | DNA gyrase inhibitor YacG | - |
| QOS47_RS02140 | zapD | 433037..433774 (-) | 738 | WP_065192136.1 | cell division protein ZapD | - |
| QOS47_RS02145 | coaE | 433826..434431 (-) | 606 | WP_279133236.1 | dephospho-CoA kinase | - |
| QOS47_RS02150 | pilD | 434435..435313 (-) | 879 | WP_283597006.1 | A24 family peptidase | Machinery gene |
| QOS47_RS02155 | pilC | 435377..436597 (-) | 1221 | WP_181315634.1 | type II secretion system F family protein | Machinery gene |
| QOS47_RS02160 | pilB | 436654..438339 (-) | 1686 | WP_283597010.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| QOS47_RS02165 | pilA | 438339..438740 (-) | 402 | WP_283598058.1 | pilin | Machinery gene |
| QOS47_RS02170 | pilA | 438743..439132 (-) | 390 | WP_283597013.1 | pilin | Machinery gene |
| QOS47_RS02175 | nadC | 439479..440366 (-) | 888 | WP_065194571.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| QOS47_RS02180 | ampD | 440595..441140 (+) | 546 | WP_283597015.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| QOS47_RS02185 | pdhR | 441447..442220 (+) | 774 | WP_065192130.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 561 a.a. Molecular weight: 62379.87 Da Isoelectric Point: 5.0303
>NTDB_id=1158773 QOS47_RS02160 WP_283597010.1 436654..438339(-) (pilB) [Photobacterium phosphoreum strain MIP2473 isolate MIP2473]
MQTNLASILFQAELISREQEQQIVESVQAEGINVPTAITRLGIMADDELARSLSHLFTLDRVDVHHYDFQGCCQSVYQRE
LVLRHRVLPLAKDNNTLFVGLSDPTNVDAQDEFRFAIGKNVEPLLLDNKQLESAIRRVYGSDIGDVGNSRQISDEDLGNL
IDINDLEIDDATDLSQDSAPVTRYINQVLMDALRRKASDIHFEPYETSYRIRFRCDGILHQHLTPPSSLSRRLSTRLKVM
SKLNIAERRQPQDGRIKLKLSDSVAIDLRVSTLPTLWGEKVVLRILDSSSSSLNIDILGYSEAQKQAYLTALQRPQGMIL
MTGPTGSGKTVSLYTGLSILNTDERNISTAEDPVEINLQGINQVQINNLAGLGFAEALRSFLRQDPDVVMVGEIRDLETA
EIAVKAAQTGHLVLSTLHTNSAAETITRLTNMGVEDFNLASSLSLIIAQRLARRLCSHCKQPHLLDDLTCERLKLPLNSS
VFQANKEGCDDCNKGYVGRVGIYEVMQFSREIAEALMQNATSLQLEDIAASQGMQRLRESGIDKLVAGITSLTELQRVLQ
L
MQTNLASILFQAELISREQEQQIVESVQAEGINVPTAITRLGIMADDELARSLSHLFTLDRVDVHHYDFQGCCQSVYQRE
LVLRHRVLPLAKDNNTLFVGLSDPTNVDAQDEFRFAIGKNVEPLLLDNKQLESAIRRVYGSDIGDVGNSRQISDEDLGNL
IDINDLEIDDATDLSQDSAPVTRYINQVLMDALRRKASDIHFEPYETSYRIRFRCDGILHQHLTPPSSLSRRLSTRLKVM
SKLNIAERRQPQDGRIKLKLSDSVAIDLRVSTLPTLWGEKVVLRILDSSSSSLNIDILGYSEAQKQAYLTALQRPQGMIL
MTGPTGSGKTVSLYTGLSILNTDERNISTAEDPVEINLQGINQVQINNLAGLGFAEALRSFLRQDPDVVMVGEIRDLETA
EIAVKAAQTGHLVLSTLHTNSAAETITRLTNMGVEDFNLASSLSLIIAQRLARRLCSHCKQPHLLDDLTCERLKLPLNSS
VFQANKEGCDDCNKGYVGRVGIYEVMQFSREIAEALMQNATSLQLEDIAASQGMQRLRESGIDKLVAGITSLTELQRVLQ
L
Nucleotide
Download Length: 1686 bp
>NTDB_id=1158773 QOS47_RS02160 WP_283597010.1 436654..438339(-) (pilB) [Photobacterium phosphoreum strain MIP2473 isolate MIP2473]
ATGCAAACCAACCTCGCTTCGATCCTGTTCCAAGCTGAGTTAATCAGCCGCGAGCAGGAACAACAAATAGTCGAGTCAGT
ACAGGCGGAAGGGATCAATGTCCCGACCGCCATTACTCGCTTAGGCATCATGGCGGATGATGAACTGGCACGTTCATTGT
CGCACCTGTTCACTCTTGATCGGGTTGATGTTCACCACTATGACTTTCAAGGTTGCTGCCAAAGTGTCTACCAACGCGAA
CTGGTGTTACGCCATCGCGTGCTGCCGCTGGCGAAAGACAATAACACCCTTTTCGTTGGGCTGAGCGATCCTACCAATGT
CGATGCGCAAGATGAATTTCGCTTCGCTATTGGTAAGAACGTTGAACCGCTATTATTAGATAATAAGCAACTTGAATCCG
CTATTCGACGGGTTTATGGCAGTGATATTGGCGATGTCGGTAATAGCCGTCAAATCAGCGATGAAGATCTCGGTAACTTA
ATTGATATTAACGATCTTGAAATTGATGATGCTACCGATTTAAGCCAAGACAGCGCCCCCGTTACCCGTTATATCAACCA
AGTATTAATGGATGCACTGCGTCGCAAAGCATCAGATATTCACTTTGAACCTTATGAAACCAGCTATCGAATTCGGTTTC
GCTGTGACGGTATTTTACATCAGCATTTAACCCCACCGTCAAGTTTGTCACGGCGGTTATCGACCCGTCTTAAAGTGATG
TCAAAGCTCAATATTGCCGAGCGTCGCCAACCGCAAGATGGACGGATCAAACTTAAATTATCTGATTCAGTGGCAATTGA
TCTGCGAGTTTCGACCCTACCGACCTTGTGGGGTGAAAAAGTGGTGCTGCGGATTTTAGACAGTTCCAGTTCGAGCTTAA
ACATTGATATTTTAGGTTACAGCGAGGCCCAAAAACAGGCCTATTTAACCGCATTACAACGCCCGCAAGGGATGATTTTA
ATGACAGGTCCAACAGGCAGTGGCAAAACCGTGTCGTTGTATACCGGATTAAGTATTTTAAACACTGACGAGCGTAATAT
TTCTACCGCCGAAGATCCGGTTGAAATTAACCTCCAAGGGATTAACCAAGTTCAGATCAATAATCTCGCCGGACTTGGGT
TTGCGGAAGCATTACGATCGTTTTTACGTCAAGATCCTGATGTGGTGATGGTCGGTGAAATTCGTGATCTAGAAACCGCA
GAGATTGCAGTAAAAGCAGCCCAAACCGGGCACTTGGTGTTATCAACCCTGCATACTAACTCTGCTGCCGAAACCATTAC
CCGTTTAACTAACATGGGCGTCGAAGATTTTAACCTCGCCTCATCGCTCAGTTTAATCATTGCTCAACGGCTGGCGCGGC
GGTTATGTAGCCACTGTAAACAACCGCACTTACTTGATGATTTGACCTGTGAGCGCTTAAAGCTGCCACTTAATAGCAGT
GTATTTCAAGCCAATAAAGAAGGCTGTGATGATTGCAACAAAGGCTATGTTGGGCGCGTCGGTATTTATGAAGTAATGCA
ATTTAGCCGTGAAATCGCCGAAGCATTAATGCAAAACGCCACCAGCTTACAATTAGAAGATATTGCCGCCAGCCAAGGCA
TGCAACGGCTGCGAGAATCAGGGATAGACAAACTGGTTGCTGGCATCACCAGCCTCACAGAATTACAACGGGTACTGCAA
CTTTAA
ATGCAAACCAACCTCGCTTCGATCCTGTTCCAAGCTGAGTTAATCAGCCGCGAGCAGGAACAACAAATAGTCGAGTCAGT
ACAGGCGGAAGGGATCAATGTCCCGACCGCCATTACTCGCTTAGGCATCATGGCGGATGATGAACTGGCACGTTCATTGT
CGCACCTGTTCACTCTTGATCGGGTTGATGTTCACCACTATGACTTTCAAGGTTGCTGCCAAAGTGTCTACCAACGCGAA
CTGGTGTTACGCCATCGCGTGCTGCCGCTGGCGAAAGACAATAACACCCTTTTCGTTGGGCTGAGCGATCCTACCAATGT
CGATGCGCAAGATGAATTTCGCTTCGCTATTGGTAAGAACGTTGAACCGCTATTATTAGATAATAAGCAACTTGAATCCG
CTATTCGACGGGTTTATGGCAGTGATATTGGCGATGTCGGTAATAGCCGTCAAATCAGCGATGAAGATCTCGGTAACTTA
ATTGATATTAACGATCTTGAAATTGATGATGCTACCGATTTAAGCCAAGACAGCGCCCCCGTTACCCGTTATATCAACCA
AGTATTAATGGATGCACTGCGTCGCAAAGCATCAGATATTCACTTTGAACCTTATGAAACCAGCTATCGAATTCGGTTTC
GCTGTGACGGTATTTTACATCAGCATTTAACCCCACCGTCAAGTTTGTCACGGCGGTTATCGACCCGTCTTAAAGTGATG
TCAAAGCTCAATATTGCCGAGCGTCGCCAACCGCAAGATGGACGGATCAAACTTAAATTATCTGATTCAGTGGCAATTGA
TCTGCGAGTTTCGACCCTACCGACCTTGTGGGGTGAAAAAGTGGTGCTGCGGATTTTAGACAGTTCCAGTTCGAGCTTAA
ACATTGATATTTTAGGTTACAGCGAGGCCCAAAAACAGGCCTATTTAACCGCATTACAACGCCCGCAAGGGATGATTTTA
ATGACAGGTCCAACAGGCAGTGGCAAAACCGTGTCGTTGTATACCGGATTAAGTATTTTAAACACTGACGAGCGTAATAT
TTCTACCGCCGAAGATCCGGTTGAAATTAACCTCCAAGGGATTAACCAAGTTCAGATCAATAATCTCGCCGGACTTGGGT
TTGCGGAAGCATTACGATCGTTTTTACGTCAAGATCCTGATGTGGTGATGGTCGGTGAAATTCGTGATCTAGAAACCGCA
GAGATTGCAGTAAAAGCAGCCCAAACCGGGCACTTGGTGTTATCAACCCTGCATACTAACTCTGCTGCCGAAACCATTAC
CCGTTTAACTAACATGGGCGTCGAAGATTTTAACCTCGCCTCATCGCTCAGTTTAATCATTGCTCAACGGCTGGCGCGGC
GGTTATGTAGCCACTGTAAACAACCGCACTTACTTGATGATTTGACCTGTGAGCGCTTAAAGCTGCCACTTAATAGCAGT
GTATTTCAAGCCAATAAAGAAGGCTGTGATGATTGCAACAAAGGCTATGTTGGGCGCGTCGGTATTTATGAAGTAATGCA
ATTTAGCCGTGAAATCGCCGAAGCATTAATGCAAAACGCCACCAGCTTACAATTAGAAGATATTGCCGCCAGCCAAGGCA
TGCAACGGCTGCGAGAATCAGGGATAGACAAACTGGTTGCTGGCATCACCAGCCTCACAGAATTACAACGGGTACTGCAA
CTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilB | Vibrio cholerae strain A1552 |
63.214 |
99.822 |
0.631 |
| pilB | Vibrio parahaemolyticus RIMD 2210633 |
60.714 |
99.822 |
0.606 |
| pilB | Vibrio campbellii strain DS40M4 |
59.821 |
99.822 |
0.597 |
| pilB | Acinetobacter baumannii D1279779 |
52.987 |
92.513 |
0.49 |
| pilB | Legionella pneumophila strain ERS1305867 |
47.276 |
100 |
0.48 |
| pilB | Acinetobacter baylyi ADP1 |
54.115 |
86.631 |
0.469 |
| pilF | Neisseria gonorrhoeae MS11 |
45.293 |
100 |
0.455 |
| pilB/pilB1 | Synechocystis sp. PCC 6803 |
39.147 |
91.979 |
0.36 |