Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | QOS47_RS02170 | Genome accession | NZ_OX460909 |
| Coordinates | 438743..439132 (-) | Length | 129 a.a. |
| NCBI ID | WP_283597013.1 | Uniprot ID | - |
| Organism | Photobacterium phosphoreum strain MIP2473 isolate MIP2473 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 433743..444132
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QOS47_RS02145 | coaE | 433826..434431 (-) | 606 | WP_279133236.1 | dephospho-CoA kinase | - |
| QOS47_RS02150 | pilD | 434435..435313 (-) | 879 | WP_283597006.1 | A24 family peptidase | Machinery gene |
| QOS47_RS02155 | pilC | 435377..436597 (-) | 1221 | WP_181315634.1 | type II secretion system F family protein | Machinery gene |
| QOS47_RS02160 | pilB | 436654..438339 (-) | 1686 | WP_283597010.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| QOS47_RS02165 | pilA | 438339..438740 (-) | 402 | WP_283598058.1 | pilin | Machinery gene |
| QOS47_RS02170 | pilA | 438743..439132 (-) | 390 | WP_283597013.1 | pilin | Machinery gene |
| QOS47_RS02175 | nadC | 439479..440366 (-) | 888 | WP_065194571.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| QOS47_RS02180 | ampD | 440595..441140 (+) | 546 | WP_283597015.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| QOS47_RS02185 | pdhR | 441447..442220 (+) | 774 | WP_065192130.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 129 a.a. Molecular weight: 13079.00 Da Isoelectric Point: 6.9452
>NTDB_id=1158775 QOS47_RS02170 WP_283597013.1 438743..439132(-) (pilA) [Photobacterium phosphoreum strain MIP2473 isolate MIP2473]
MKKQQGFTLIELMIVVAVIGVLSAIAVPKYQEYVKKAAIGTALASVSAYKTQAEDAIATSGKFISAADATFGIGTIKFTP
GASSAGTIIATIDEGSADTATVTLDRSADGLWTCSHSLSASVSLTGCKG
MKKQQGFTLIELMIVVAVIGVLSAIAVPKYQEYVKKAAIGTALASVSAYKTQAEDAIATSGKFISAADATFGIGTIKFTP
GASSAGTIIATIDEGSADTATVTLDRSADGLWTCSHSLSASVSLTGCKG
Nucleotide
Download Length: 390 bp
>NTDB_id=1158775 QOS47_RS02170 WP_283597013.1 438743..439132(-) (pilA) [Photobacterium phosphoreum strain MIP2473 isolate MIP2473]
ATGAAAAAGCAACAAGGTTTTACCCTTATTGAACTGATGATCGTAGTAGCGGTGATCGGTGTGTTATCGGCAATAGCAGT
TCCTAAATACCAAGAATACGTAAAAAAAGCAGCCATTGGTACTGCACTCGCTTCTGTATCAGCCTATAAAACACAAGCAG
AAGATGCAATTGCAACTAGTGGTAAATTTATTTCTGCAGCAGATGCAACTTTTGGTATTGGTACAATTAAATTTACTCCA
GGTGCATCATCTGCAGGGACGATAATTGCCACTATAGATGAAGGCTCAGCCGATACAGCAACAGTAACTTTAGATAGAAG
CGCTGATGGCTTATGGACATGTAGTCATTCTTTAAGTGCAAGTGTTAGTTTAACTGGATGTAAGGGATAA
ATGAAAAAGCAACAAGGTTTTACCCTTATTGAACTGATGATCGTAGTAGCGGTGATCGGTGTGTTATCGGCAATAGCAGT
TCCTAAATACCAAGAATACGTAAAAAAAGCAGCCATTGGTACTGCACTCGCTTCTGTATCAGCCTATAAAACACAAGCAG
AAGATGCAATTGCAACTAGTGGTAAATTTATTTCTGCAGCAGATGCAACTTTTGGTATTGGTACAATTAAATTTACTCCA
GGTGCATCATCTGCAGGGACGATAATTGCCACTATAGATGAAGGCTCAGCCGATACAGCAACAGTAACTTTAGATAGAAG
CGCTGATGGCTTATGGACATGTAGTCATTCTTTAAGTGCAAGTGTTAGTTTAACTGGATGTAAGGGATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
49.286 |
100 |
0.535 |
| pilA | Vibrio cholerae strain A1552 |
49.286 |
100 |
0.535 |
| pilA | Vibrio cholerae C6706 |
49.286 |
100 |
0.535 |
| pilA | Pseudomonas aeruginosa PAK |
40.268 |
100 |
0.465 |
| comP | Acinetobacter baylyi ADP1 |
37.584 |
100 |
0.434 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
41.045 |
100 |
0.426 |
| pilA | Acinetobacter baumannii strain A118 |
38.571 |
100 |
0.419 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
39.85 |
100 |
0.411 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
37.121 |
100 |
0.38 |
| pilA2 | Legionella pneumophila str. Paris |
39.837 |
95.349 |
0.38 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
39.837 |
95.349 |
0.38 |